Non-Coding RNA Search

Ss1.1-rpliv0129_b5.5

Sequence:


               
               AGAAGACTAATCAGATGGCTGCTACCATTAAACAACTCGAACAAAGATTGCGCCAGGCTG
AGCGAGACCGCCAGTCTGCTGAGTTGGACAACCGACTCTTCAAGCAGGACTTCGGAGACA
AGATCAACAGTCTACAGCTGGAAGTGGAGGCGCTCACCAGGCAGCGAAACCGGCTTGAGT
TAGAATTAAAGCAGGAAAGAGAAGGAAGATCACAAAACAGCAGGAGCATCCCAGGAAAGG
GTTCCCAGAAGCCAGAGACCAAAACGGATGGGAGGCGCAGAGCTCAAGAGGAAAATGTGC
AACCAGCAAAGCCCCTGGAAGAAAGCCACAGGCTGCAGTCTCACCCTGTGGATGAGCAGG
ATCAGCCGCTGCTCTCTGAAAAGTCCCAGATGTGTCAGCTGTGCCGAGAAGATTGCAGCC
TAACAAAGCATGTGTGTAAGAACTGCAGAGGTACCTTCTGTGATGCCTGCTCAACAAACC
AGCTGCCTCTTCCCTCAAGTATCAAGCCTGAGCGAGTCTGCAATCCCTGTCATGAGCATC
TGATGAAACAGTATTCCACCAGCCCATCGTAAGACTGGAGGCCAAGATTTGGACCAAAAT
GTCTCTACCCGTGTTAGCTGTCTCAGATCCCCTAGAGCCAAGACTTTAGAGTCAACTCAA
GAGTTGATAGGAATGATTTAAATAAACCAGGTCCAGGGAGAAAAGGCAGTGGCTGGTGAT
GCTGCAAATTTTGCTCGCTTTCTCTAACGACTGTATGAATAAAAGTTACTCAGTTGAGCC
TCTCTCTGCTAAATCTAAACGACCCCACTTTGAAGCTTTTATTTCGTAGTATGTCTTTGG
AAGGGCTATTCATTTTTATGAATAGTCCTAAGACTGGGGTGGATGTTATAGGAGAGAGGG
TCCTTAGTAGATAAGAATAAAAAGGAAAGTGACCATCCTTCTATTACATTTGCAGATTAA
GGGGGGACGATAATTGGTAACTGAGATTGAAATGACAGATGTTACATATTTTCCCAGGTG
CTGCTTGACATAAACATTGTTTCCTCTTTACCCCCACTAACTACCTCTTCTTTAAATATC
TACCAAACTGTGAACCCAAACTCAGGGAAAAGAAATTACAGAGTTAATATAAATTCTGAA
TGTACTTAATATTATAATATATTATAATTTCAGAACCAGAACTTTCTAGTTCTGGCCTAC
AAGTGTTTTCATTATCAGAATAAGGAGGAGGAACATTTTGCCGTTTCTCCACTTGATGAC
TTCAAAAGTCACCTGCCCTTTTCAGAACCTTCTACAGAACAAGCCACCTCTCTTCGCCTG
TCCTCCCCTCCTCTGAATCATCATGGAAATTATAAGGGGTTTTAACAAAAGGTTTGGCTT
CTGCACACAGGGAGTATTGAAGCAAAACTATGTCAGCTGTAAAGGAAAAAGAAATGTAAT
TTGTCCACAGCTGAGAATAATTCACTCAGAATATTTATCAAATTCTTTTGTGACTAAGAG
CTCCCTTAATCCAAGCTAAGAATCAGAACTGATAGGCAGGTTTCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGACTAATCAGATGGCTGCTACCATTAAACAACTCGAACAAAGATTGCGCCAGGCTG
AGCGAGACCGCCAGTCTGCTGAGTTGGACAACCGACTCTTCAAGCAGGACTTCGGAGACA
AGATCAACAGTCTACAGCTGGAAGTGGAGGCGCTCACCAGGCAGCGAAACCGGCTTGAGT
TAGAATTAAAGCAGGAAAGAGAAGGAAGATCACAAAACAGCAGGAGCATCCCAGGAAAGG
GTTCCCAGAAGCCAGAGACCAAAACGGATGGGAGGCGCAGAGCTCAAGAGGAAAATGTGC
AACCAGCAAAGCCCCTGGAAGAAAGCCACAGGCTGCAGTCTCACCCTGTGGATGAGCAGG
ATCAGCCGCTGCTCTCTGAAAAGTCCCAGATGTGTCAGCTGTGCCGAGAAGATTGCAGCC
TAACAAAGCATGTGTGTAAGAACTGCAGAGGTACCTTCTGTGATGCCTGCTCAACAAACC
AGCTGCCTCTTCCCTCAAGTATCAAGCCTGAGCGAGTCTGCAATCCCTGTCATGAGCATC
TGATGAAACAGTATTCCACCAGCCCATCGTAAGACTGGAGGCCAAGATTTGGACCAAAAT
GTCTCTACCCGTGTTAGCTGTCTCAGATCCCCTAGAGCCAAGACTTTAGAGTCAACTCAA
GAGTTGATAGGAATGATTTAAATAAACCAGGTCCAGGGAGAAAAGGCAGTGGCTGGTGAT
GCTGCAAATTTTGCTCGCTTTCTCTAACGACTGTATGAATAAAAGTTACTCAGTTGAGCC
TCTCTCTGCTAAATCTAAACGACCCCACTTTGAAGCTTTTATTTCGTAGTATGTCTTTGG
AAGGGCTATTCATTTTTATGAATAGTCCTAAGACTGGGGTGGATGTTATAGGAGAGAGGG
TCCTTAGTAGATAAGAATAAAAAGGAAAGTGACCATCCTTCTATTACATTTGCAGATTAA
GGGGGGACGATAATTGGTAACTGAGATTGAAATGACAGATGTTACATATTTTCCCAGGTG
CTGCTTGACATAAACATTGTTTCCTCTTTACCCCCACTAACTACCTCTTCTTTAAATATC
TACCAAACTGTGAACCCAAACTCAGGGAAAAGAAATTACAGAGTTAATATAAATTCTGAA
TGTACTTAATATTATAATATATTATAATTTCAGAACCAGAACTTTCTAGTTCTGGCCTAC
AAGTGTTTTCATTATCAGAATAAGGAGGAGGAACATTTTGCCGTTTCTCCACTTGATGAC
TTCAAAAGTCACCTGCCCTTTTCAGAACCTTCTACAGAACAAGCCACCTCTCTTCGCCTG
TCCTCCCCTCCTCTGAATCATCATGGAAATTATAAGGGGTTTTAACAAAAGGTTTGGCTT
CTGCACACAGGGAGTATTGAAGCAAAACTATGTCAGCTGTAAAGGAAAAAGAAATGTAAT
TTGTCCACAGCTGAGAATAATTCACTCAGAATATTTATCAAATTCTTTTGTGACTAAGAG
CTCCCTTAATCCAAGCTAAGAATCAGAACTGATAGGCAGGTTTCTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57095602|ref|XP_532401.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57095602|ref|XP_532401.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-147, + strand, RNAz p=0.611015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-147, + strand, RNAz p=0.611015

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-256, gnl|bosTau2|chr19 (6527735-6527990)
               

               
               1-256, gnl|Hg17|chr5 (105779744-105779489)
               

               
               1-256, gnl|Mm7|chr5 (88579492-88584613)
               


               
               267-1548, gnl|bosTau2|chr19 (6527040-6525773)
               

               
               267-1548, gnl|Hg17|chr5 (105779478-105777881)
               

               
               267-1548, gnl|Mm7|chr5 (88585996-88591536)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr19 (6527735-6527990)
               

               
               1-256, gnl|Hg17|chr5 (105779744-105779489)
               

               
               1-256, gnl|Mm7|chr5 (88579492-88584613)
               


               
               267-1548, gnl|bosTau2|chr19 (6527040-6525773)
               

               
               267-1548, gnl|Hg17|chr5 (105779478-105777881)
               

               
               267-1548, gnl|Mm7|chr5 (88585996-88591536)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbl (0.45919)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)

	1-256, gnl\|bosTau2\|chr19 (6527735-6527990)
	1-256, gnl\|Hg17\|chr5 (105779744-105779489)
	1-256, gnl\|Mm7\|chr5 (88579492-88584613)

	267-1548, gnl\|bosTau2\|chr19 (6527040-6525773)
	267-1548, gnl\|Hg17\|chr5 (105779478-105777881)
	267-1548, gnl\|Mm7\|chr5 (88585996-88591536)

	cbl (0.45919)
	liv (0.292569)
	pla (0.267344)
	ldo (0.194005)
	eye (0.170503)
	tbr (0.154178)
	spl (0.143184)
	ebs (0.118301)