Ss1.1-rpliv0129_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCC AGCGGCGCCTCGGCCAACGCCGGCAGCACCCACATCAGCAGCAGAGAGGGGGTTGGCACG GCGTCCGGAGCCGAGGAGGACGCCCCCGCCAGCAGCGAGCAGGCGAGCGCGCAGAGCGAG CCGAGCCCGGCGCCGCCCGCCCAACCCCAGATCTACCCCTGGATGCGCAAGCTGCACATA AGTCATGACAACATAGGCGGCCCTGAAGGCAAAAGGGCCCGCACGGCCTACACGCGCTAC CAGACCCTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCCGCCGAAGAAGG ATTGAAATAGCACATGCTCTTTGCCTCTCCGAGAGACAAATTAAAATCTGGTTCCAAAAC CGGAGAATGAAGTGGAAAAAAGATAATAAGCTGAAAAGCATGAGCATGGCGGCGGCGGGA GGGGCCTTCCGCCCCTGAGTCTTTGAGCGTTTAAAGTACTGAGCAGTATTAGCGGCTCCC GCGTAGTGTCAGTACTAAGGTGACTTTCTGAAACTCCCTTGTGTTCCTTCTGTGAAGAAG CCCTGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAGCCTGTTTATTGCCATTATAGC GCCTGTATAAGTAGATCTGCTTTCTGTTCATCTCTTTGTCCTGAATGGCTTTGTCTTGAA AAAAAAAAATAGATGTTTTAACTTATTTATATGAAGCAAGCTGTGTTACTTGAAGTAACT ATAACAGAAAAGAAAAGAGAAAAAAAAACACACAAAAAAGTCCCCCTTCGACCTCGTTTA GTGCCAATGTTGTGTGTTGCACTCCAGTTGTTTAACTGTGCATGTGAGTGGAAGTGTTCC TGTCTCAATAGCTCCAAGCTGTTAAAGATATTTTTATTCAAACTACCTATATTCCTTGTG TAATTAATGCTGTTGTAGAGGTGACTTGATGAGACACAACTTAACTTGTTCGACGTGTAG TGACTAGTGACTCTGTGGCGAAAACTGTGACTCCGAGCGGTGTGTCCCTGCGTGCCTTTG TAGGACCCTTTGCACGAACTCTGGAAGTGGCTCTTATAAGCGCAGCTTCAGTGATGTATG TTTTTGTGAACAAAGTTACAAATATTGTCCAAGTCTGGCTGTTAAAGCAAACTGTGATCA GCTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCC AGCGGCGCCTCGGCCAACGCCGGCAGCACCCACATCAGCAGCAGAGAGGGGGTTGGCACG GCGTCCGGAGCCGAGGAGGACGCCCCCGCCAGCAGCGAGCAGGCGAGCGCGCAGAGCGAG CCGAGCCCGGCGCCGCCCGCCCAACCCCAGATCTACCCCTGGATGCGCAAGCTGCACATA AGTCATGACAACATAGGCGGCCCTGAAGGCAAAAGGGCCCGCACGGCCTACACGCGCTAC CAGACCCTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCCGCCGAAGAAGG ATTGAAATAGCACATGCTCTTTGCCTCTCCGAGAGACAAATTAAAATCTGGTTCCAAAAC CGGAGAATGAAGTGGAAAAAAGATAATAAGCTGAAAAGCATGAGCATGGCGGCGGCGGGA GGGGCCTTCCGCCCCTGAGTCTTTGAGCGTTTAAAGTACTGAGCAGTATTAGCGGCTCCC GCGTAGTGTCAGTACTAAGGTGACTTTCTGAAACTCCCTTGTGTTCCTTCTGTGAAGAAG CCCTGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAGCCTGTTTATTGCCATTATAGC GCCTGTATAAGTAGATCTGCTTTCTGTTCATCTCTTTGTCCTGAATGGCTTTGTCTTGAA AAAAAAAAATAGATGTTTTAACTTATTTATATGAAGCAAGCTGTGTTACTTGAAGTAACT ATAACAGAAAAGAAAAGAGAAAAAAAAACACACAAAAAAGTCCCCCTTCGACCTCGTTTA GTGCCAATGTTGTGTGTTGCACTCCAGTTGTTTAACTGTGCATGTGAGTGGAAGTGTTCC TGTCTCAATAGCTCCAAGCTGTTAAAGATATTTTTATTCAAACTACCTATATTCCTTGTG TAATTAATGCTGTTGTAGAGGTGACTTGATGAGACACAACTTAACTTGTTCGACGTGTAG TGACTAGTGACTCTGTGGCGAAAACTGTGACTCCGAGCGGTGTGTCCCTGCGTGCCTTTG TAGGACCCTTTGCACGAACTCTGGAAGTGGCTCTTATAAGCGCAGCTTCAGTGATGTATG TTTTTGTGAACAAAGTTACAAATATTGTCCAAGTCTGGCTGTTAAAGCAAACTGTGATCA GCTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 326-561, - strand, RNAz p=0.974221 | |
| 1103-1212, + strand, RNAz p=0.610891 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 326-561, - strand, RNAz p=0.974221 | |
| 1103-1212, + strand, RNAz p=0.610891 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr4 (37111339-37111557) | |
| 1-219, gnl|canFam2|chr14 (43272626-43273034) | |
| 1-219, gnl|danRer3|chr19 (21700870-21700474) | |
| 1-219, gnl|dasNov1|scaffold_4770 (62151-62559) | |
| 1-219, gnl|echTel1|scaffold_290176 (73046-72638) | |
| 1-219, gnl|fr1|chrUn (24315202-24315622) | |
| 1-219, gnl|galGal2|chr7 (17083936-17084297) | |
| 1-219, gnl|hg17|chr7 (26955924-26956332) | |
| 1-219, gnl|Hg17|chr7 (26956151-26955933) | |
| 1-219, gnl|loxAfr1|scaffold_4768 (53672-54080) | |
| 1-219, gnl|mm7|chr6 (52167124-52167533) | |
| 1-219, gnl|Mm7|chr6 (52167351-52167133) | |
| 1-219, gnl|monDom2|scaffold_57 (938482-938077) | |
| 1-219, gnl|panTro1|chr6 (28086012-28086420) | |
| 1-219, gnl|rheMac2|chr3 (99082872-99082464) | |
| 1-219, gnl|rn3|chr4 (80781259-80781667) | |
| 1-219, gnl|tetNig1|chr21 (3021800-3021377) | |
| 1-219, gnl|xenTro1|scaffold_29 (1925276-1925696) | |
| 247-1212, gnl|bosTau2|chr4 (37112529-37113488) | |
| 247-1212, gnl|Hg17|chr7 (26954945-26953980) | |
| 247-1212, gnl|Mm7|chr6 (52166147-52165171) | |
| 270-482, gnl|bosTau2|chr12 (17151896-17152111) | |
| 270-482, gnl|canFam2|chr25 (14730367-14730183) | |
| 270-482, gnl|danRer3|chr24 (18852039-18852204) | |
| 270-482, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 270-482, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 270-482, gnl|fr1|chrUn (57904260-57904095) | |
| 270-482, gnl|galGal2|chrUn (97586324-97586139) | |
| 270-482, gnl|hg17|chr13 (27396453-27396637) | |
| 270-482, gnl|Hg17|chr13 (27396424-27396639) | |
| 270-482, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 270-482, gnl|mm7|chr5 (146168844-146169028) | |
| 270-482, gnl|Mm7|chr5 (146168815-146169030) | |
| 270-482, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 270-482, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 270-482, gnl|panTro1|chr14 (26578133-26578317) | |
| 270-482, gnl|rheMac2|chr17 (7585963-7586147) | |
| 270-482, gnl|rn3|chr6 (76921856-76921663) | |
| 270-482, gnl|tetNig1|chr6 (2711191-2711026) | |
| 270-482, gnl|xenTro1|scaffold_449 (633919-634092) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr4 (37111339-37111557) | |
| 1-219, gnl|canFam2|chr14 (43272626-43273034) | |
| 1-219, gnl|danRer3|chr19 (21700870-21700474) | |
| 1-219, gnl|dasNov1|scaffold_4770 (62151-62559) | |
| 1-219, gnl|echTel1|scaffold_290176 (73046-72638) | |
| 1-219, gnl|fr1|chrUn (24315202-24315622) | |
| 1-219, gnl|galGal2|chr7 (17083936-17084297) | |
| 1-219, gnl|hg17|chr7 (26955924-26956332) | |
| 1-219, gnl|Hg17|chr7 (26956151-26955933) | |
| 1-219, gnl|loxAfr1|scaffold_4768 (53672-54080) | |
| 1-219, gnl|mm7|chr6 (52167124-52167533) | |
| 1-219, gnl|Mm7|chr6 (52167351-52167133) | |
| 1-219, gnl|monDom2|scaffold_57 (938482-938077) | |
| 1-219, gnl|panTro1|chr6 (28086012-28086420) | |
| 1-219, gnl|rheMac2|chr3 (99082872-99082464) | |
| 1-219, gnl|rn3|chr4 (80781259-80781667) | |
| 1-219, gnl|tetNig1|chr21 (3021800-3021377) | |
| 1-219, gnl|xenTro1|scaffold_29 (1925276-1925696) | |
| 247-1212, gnl|bosTau2|chr4 (37112529-37113488) | |
| 247-1212, gnl|Hg17|chr7 (26954945-26953980) | |
| 247-1212, gnl|Mm7|chr6 (52166147-52165171) | |
| 270-482, gnl|bosTau2|chr12 (17151896-17152111) | |
| 270-482, gnl|canFam2|chr25 (14730367-14730183) | |
| 270-482, gnl|danRer3|chr24 (18852039-18852204) | |
| 270-482, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 270-482, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 270-482, gnl|fr1|chrUn (57904260-57904095) | |
| 270-482, gnl|galGal2|chrUn (97586324-97586139) | |
| 270-482, gnl|hg17|chr13 (27396453-27396637) | |
| 270-482, gnl|Hg17|chr13 (27396424-27396639) | |
| 270-482, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 270-482, gnl|mm7|chr5 (146168844-146169028) | |
| 270-482, gnl|Mm7|chr5 (146168815-146169030) | |
| 270-482, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 270-482, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 270-482, gnl|panTro1|chr14 (26578133-26578317) | |
| 270-482, gnl|rheMac2|chr17 (7585963-7586147) | |
| 270-482, gnl|rn3|chr6 (76921856-76921663) | |
| 270-482, gnl|tetNig1|chr6 (2711191-2711026) | |
| 270-482, gnl|xenTro1|scaffold_449 (633919-634092) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| pro (0.512033) | |
| amn (0.417711) | |
| kid (0.259471) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| liv (0.146284) | |
| ste (0.135208) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| amn (0.417711) | |
| kid (0.259471) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| liv (0.146284) | |
| ste (0.135208) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| spc (0.113366) |