Non-Coding RNA Search

Ss1.1-rpliv0129_k7.5

Sequence:


               
               TGTTTCTGAATACATGGTCAGATTTTTGGAAAAAAACAAAAACAAAAACAAAAAAAAAAA
AAACCAAGTAAAGTTCAACAACCATCCAATGAGAAAATTGCAAGTAGTGTGACAGAGCTG
ATTGATTTTGTTGCTTTCTTGATTTTTTTTTTCAAAATGGGTTTACTAAGATGTAGATGA
CTTAACTGCCTCCTCCTTCGTCTGAAAAAAAAAATGCCAATATTCAATCATCATGCAGCA
TTATAACAAGCCTTATAAGTCCTAAAGCATTAAGTTGCACTTTCTTGAGGAGGGGTAGTG
CAGTATTTCTCTGGCCAGTATGAATGAAGTTTATACTTAACATATTTGATAGAAACATAG
ATCAAGCTATGGCACAGCAACTCATCAGATAGCTAGCTTTGACGTCTGGGCACAATTGAA
CCAAGTTCCATCGTGAATCTTTATAATGACTGACTTTGGTGTATAGTGCAGTAAAGAAAT
AGTGCTCCTAGTTAAGTATTTGTCAGCATCCTTTTGTCTCTAACTCGTTTCTATTTTTAC
AGCCACACAATCTTGGCATGTATTAAGAAAAAAAAAAAAATCCCTTGTTCAAGTAGTTTT
TCCACCTATCAGCACTGAGTAAATGCCATAAACCCATCGAAATGGTCTAAATGTTCCATC
TGTTCTCCTGTTTTGCCAGTTTATATAGTAATGAAATACATTTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCTGAATACATGGTCAGATTTTTGGAAAAAAACAAAAACAAAAACAAAAAAAAAAA
AAACCAAGTAAAGTTCAACAACCATCCAATGAGAAAATTGCAAGTAGTGTGACAGAGCTG
ATTGATTTTGTTGCTTTCTTGATTTTTTTTTTCAAAATGGGTTTACTAAGATGTAGATGA
CTTAACTGCCTCCTCCTTCGTCTGAAAAAAAAAATGCCAATATTCAATCATCATGCAGCA
TTATAACAAGCCTTATAAGTCCTAAAGCATTAAGTTGCACTTTCTTGAGGAGGGGTAGTG
CAGTATTTCTCTGGCCAGTATGAATGAAGTTTATACTTAACATATTTGATAGAAACATAG
ATCAAGCTATGGCACAGCAACTCATCAGATAGCTAGCTTTGACGTCTGGGCACAATTGAA
CCAAGTTCCATCGTGAATCTTTATAATGACTGACTTTGGTGTATAGTGCAGTAAAGAAAT
AGTGCTCCTAGTTAAGTATTTGTCAGCATCCTTTTGTCTCTAACTCGTTTCTATTTTTAC
AGCCACACAATCTTGGCATGTATTAAGAAAAAAAAAAAAATCCCTTGTTCAAGTAGTTTT
TCCACCTATCAGCACTGAGTAAATGCCATAAACCCATCGAAATGGTCTAAATGTTCCATC
TGTTCTCCTGTTTTGCCAGTTTATATAGTAATGAAATACATTTGTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-90, - strand, RNAz p=0.948713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.948713

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr24 (35039347-35040041)
               

               
               1-708, gnl|Hg17|chr18 (51045063-51044377)
               

               
               1-708, gnl|Mm7|chr18 (70076494-70077222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr24 (35039347-35040041)
               

               
               1-708, gnl|Hg17|chr18 (51045063-51044377)
               

               
               1-708, gnl|Mm7|chr18 (70076494-70077222)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.36543)
               

               
               liv (0.292569)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               liv (0.292569)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)

	1-708, gnl\|bosTau2\|chr24 (35039347-35040041)
	1-708, gnl\|Hg17\|chr18 (51045063-51044377)
	1-708, gnl\|Mm7\|chr18 (70076494-70077222)

	sag (0.36543)
	liv (0.292569)
	ecc (0.23007)
	eye (0.170503)
	lun (0.150489)
	lnt (0.142308)