Non-Coding RNA Search

Ss1.1-rpliv0130_o20.5

Sequence:


               
               AGCGGCGCCGAAGACCTCGCCGAGAGCGAGCTGGAGGTGGCCTGTCCGCACCGGAGCGCC
AAGCCTCCGGCCCAGAGACCTGGAGAAGGTGCCAGGCACGACCAGAGGCCTCCTCCTCCT
TATCCTGGTCCAGGAAAGCCAGCCGTCGCAGTGGCCCACCAGCCCGCGGAGTCACCGCTG
TGGAGGCCTCAGAGGCCAGGAGAAGGCTCCGGATCAGCGTCGCAAGAGGGAAGCCAAACA
GGCGATCGAGAGCCTCAGACCGCCCAGCAGCCGGTGAGCAGCGCCTACCCCAGTCCGGCC
AGCGATCAGAACAGTGAGACCCTGGAACCCAACTGGCTCGACTGGCAGAGGGAGCGGTGG
CAGATCTGGGAGCTCTTATGCGCCGACAACCCCGATGCCCTCCCGGAAACGCTGGTATGA
GCCCTGTGCGCTCTCGAGCCCTCCGGCCCCAAACAGCCTTCTTCCACTCAGCAGGGGAAA
AAGTGGGTATTGCAATTGGGCACTTACTTACGTTTCTTCTTTTACACCTTAAAAAAAAAT
AATAATAACACAAGCGGAAATTCGGTTCACTTACAGATAGAGAGCACTTGTACCCTGGCC
CTTTATAATAAGATTCTATTGCATAGCCAGCATTCAGATAAAAGAAAAACAAACGGGGAC
GCTCATAGCCAACCTAACAGCTCTTCACATTGGCTCTGCATAAGATACAACTCTCGCTTT
GGTATTGCTTAATTGTATTTATGTGTCTTCAGTTTTGACTCTTGTATATTCTGTAACAGA
TTATGTATGATACTCGTATATGTTACATTCACAGAAGACAGAAGGAACACATTTTTAAAT
CACTTATTCTAAGTAAGGAGATTCTATAGAATGTTCTAGAACTTGCACAAGCGGGTTTCT
GTGCTTTTGTGATAGCTTTCTAACTGGGGACAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCGCCGAAGACCTCGCCGAGAGCGAGCTGGAGGTGGCCTGTCCGCACCGGAGCGCC
AAGCCTCCGGCCCAGAGACCTGGAGAAGGTGCCAGGCACGACCAGAGGCCTCCTCCTCCT
TATCCTGGTCCAGGAAAGCCAGCCGTCGCAGTGGCCCACCAGCCCGCGGAGTCACCGCTG
TGGAGGCCTCAGAGGCCAGGAGAAGGCTCCGGATCAGCGTCGCAAGAGGGAAGCCAAACA
GGCGATCGAGAGCCTCAGACCGCCCAGCAGCCGGTGAGCAGCGCCTACCCCAGTCCGGCC
AGCGATCAGAACAGTGAGACCCTGGAACCCAACTGGCTCGACTGGCAGAGGGAGCGGTGG
CAGATCTGGGAGCTCTTATGCGCCGACAACCCCGATGCCCTCCCGGAAACGCTGGTATGA
GCCCTGTGCGCTCTCGAGCCCTCCGGCCCCAAACAGCCTTCTTCCACTCAGCAGGGGAAA
AAGTGGGTATTGCAATTGGGCACTTACTTACGTTTCTTCTTTTACACCTTAAAAAAAAAT
AATAATAACACAAGCGGAAATTCGGTTCACTTACAGATAGAGAGCACTTGTACCCTGGCC
CTTTATAATAAGATTCTATTGCATAGCCAGCATTCAGATAAAAGAAAAACAAACGGGGAC
GCTCATAGCCAACCTAACAGCTCTTCACATTGGCTCTGCATAAGATACAACTCTCGCTTT
GGTATTGCTTAATTGTATTTATGTGTCTTCAGTTTTGACTCTTGTATATTCTGTAACAGA
TTATGTATGATACTCGTATATGTTACATTCACAGAAGACAGAAGGAACACATTTTTAAAT
CACTTATTCTAAGTAAGGAGATTCTATAGAATGTTCTAGAACTTGCACAAGCGGGTTTCT
GTGCTTTTGTGATAGCTTTCTAACTGGGGACAGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61875136|ref|XP_586352.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875136|ref|XP_586352.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chrX (41926798-41925865)
               

               
               1-936, gnl|Hg17|chrX (10917035-10916106)
               

               
               1-936, gnl|Mm7|chrX (164076954-164077888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chrX (41926798-41925865)
               

               
               1-936, gnl|Hg17|chrX (10917035-10916106)
               

               
               1-936, gnl|Mm7|chrX (164076954-164077888)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               csk (0.140746)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               csk (0.140746)

	1-936, gnl\|bosTau2\|chrX (41926798-41925865)
	1-936, gnl\|Hg17\|chrX (10917035-10916106)
	1-936, gnl\|Mm7\|chrX (164076954-164077888)