Non-Coding RNA Search

Ss1.1-rpliv0130_p4.5

Sequence:


               
               CTGTGGTGAGAGGCAAAGGGATTCACTGAAGCTAGAAGTCTGGTCATTTCTGAAGGTTGA
GGAAAAATGGCTTTGAGGAAAGAGTATTCATCTATTTCTGTGTTATAATTAGTTGAACTC
AAACAGTTATCTGTTATTTAAAAATTTTTTTTCTTGGTAAATTATGGATAGCAAATTGAC
TTCTCACAGGACCTGCTGCACACTTCAGTGTCTTCCTGGTATCAAAGTGCCATTTCCTCA
AGGAAAATGCATGTATCAATAACAAAAGCTCATTAGGCGGGCCATCATTGTTTTAAACAA
CAATAAACAGCCTCTGGGGCTTGGGGAAGTGAAGAGTACTTCAGAGTTGGTTGTTAGAGC
TGATTTAGTTAGGCCACTGCCATCTGTGAAGGAAGACAGGTGAAGGAGCTGGGCTGGTGA
ATAGATATTTGAATATGAGGGAAGAACCCTCTTTGTCTCTGTAGAGAGGTGGGAAGATGA
GGGTGCTATTTATGAGAATAAACCAGTAGGGATTTGGGAGTTTGGGGTGAGTGGCAGGAG
AGCGTACTCTGAGAGTTCCCAAATGAATTTAACATAAGTTTACGTTTTTTTATTTTATTT
TATTTTTTTAACGTAAGTTAAACGTGAGGGAGCTTAGGGAAAGATTTGGTGGGGTAAACA
TATCACAGGTGCCTATCCTGTGTGGGGAGGTTGTAACTTAGAGTAATGTCAGTATCTCAG
CACTTAGGCTGGGAACCACAGGGCTGCTCCCTGGGTTGAAAATAGAATGTGTAGAATACA
ATGTGTACAACTGGAGATCTTTTTCAAGATCACAACAGGATCAAAGTATCTCATCCAAAG
GACATTATGAGGTTTTGATATCTCAGACCTGTCAGAAAAGTAGGATTACAGGGACTCACT
CTCAGATTTTATACATATAAACTTTGTGTTTTGCCAGATTATACTTAGATGGTATCCACA
GAAATGGAGCCTATGTGTTGCCTTCCTTTTTCACCTGAAACACTTATGTCTATAAAAATG
CAATATAGGCTTGTGGTTCTTAACCTTTTCTTTCTTTTTATCCTTTACCTTTTCTAATAA
GCGGTACCATTTTTAAGATCCCAAAGTCAGCAGACTCCATCCCAACAAGATTATAGTTGT
ATTTTTAGTATCTTTTGATGGAAAAAACACATAACAAAAAGCTGCTACAAGCTTTTACAT
CAATTTGTCTTTATTAGTCACACCAGGATCTATATATCCAGTTGAAGTATAGTATATACG
TATTTGTAAGATAAATGTTATTAATTCAGATTAAAGATAATGCTTATACAGATTTCTTAT
AATAACTCCATGGCCTTACAGAGGTTCAAATTCCTTGGGTTGTGAATCACTCACATAGAT
TGAGGTTAAGATGTGTGTCCAGAAAACTGCTTACTCATGTATAGAAATTTATAGTCTTAT
TTGAAATCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGTGAGAGGCAAAGGGATTCACTGAAGCTAGAAGTCTGGTCATTTCTGAAGGTTGA
GGAAAAATGGCTTTGAGGAAAGAGTATTCATCTATTTCTGTGTTATAATTAGTTGAACTC
AAACAGTTATCTGTTATTTAAAAATTTTTTTTCTTGGTAAATTATGGATAGCAAATTGAC
TTCTCACAGGACCTGCTGCACACTTCAGTGTCTTCCTGGTATCAAAGTGCCATTTCCTCA
AGGAAAATGCATGTATCAATAACAAAAGCTCATTAGGCGGGCCATCATTGTTTTAAACAA
CAATAAACAGCCTCTGGGGCTTGGGGAAGTGAAGAGTACTTCAGAGTTGGTTGTTAGAGC
TGATTTAGTTAGGCCACTGCCATCTGTGAAGGAAGACAGGTGAAGGAGCTGGGCTGGTGA
ATAGATATTTGAATATGAGGGAAGAACCCTCTTTGTCTCTGTAGAGAGGTGGGAAGATGA
GGGTGCTATTTATGAGAATAAACCAGTAGGGATTTGGGAGTTTGGGGTGAGTGGCAGGAG
AGCGTACTCTGAGAGTTCCCAAATGAATTTAACATAAGTTTACGTTTTTTTATTTTATTT
TATTTTTTTAACGTAAGTTAAACGTGAGGGAGCTTAGGGAAAGATTTGGTGGGGTAAACA
TATCACAGGTGCCTATCCTGTGTGGGGAGGTTGTAACTTAGAGTAATGTCAGTATCTCAG
CACTTAGGCTGGGAACCACAGGGCTGCTCCCTGGGTTGAAAATAGAATGTGTAGAATACA
ATGTGTACAACTGGAGATCTTTTTCAAGATCACAACAGGATCAAAGTATCTCATCCAAAG
GACATTATGAGGTTTTGATATCTCAGACCTGTCAGAAAAGTAGGATTACAGGGACTCACT
CTCAGATTTTATACATATAAACTTTGTGTTTTGCCAGATTATACTTAGATGGTATCCACA
GAAATGGAGCCTATGTGTTGCCTTCCTTTTTCACCTGAAACACTTATGTCTATAAAAATG
CAATATAGGCTTGTGGTTCTTAACCTTTTCTTTCTTTTTATCCTTTACCTTTTCTAATAA
GCGGTACCATTTTTAAGATCCCAAAGTCAGCAGACTCCATCCCAACAAGATTATAGTTGT
ATTTTTAGTATCTTTTGATGGAAAAAACACATAACAAAAAGCTGCTACAAGCTTTTACAT
CAATTTGTCTTTATTAGTCACACCAGGATCTATATATCCAGTTGAAGTATAGTATATACG
TATTTGTAAGATAAATGTTATTAATTCAGATTAAAGATAATGCTTATACAGATTTCTTAT
AATAACTCCATGGCCTTACAGAGGTTCAAATTCCTTGGGTTGTGAATCACTCACATAGAT
TGAGGTTAAGATGTGTGTCCAGAAAACTGCTTACTCATGTATAGAAATTTATAGTCTTAT
TTGAAATCACTG

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               2-587, gnl|bosTau2|chr3 (15365882-15366502)
               

               
               2-587, gnl|Hg17|chr1 (143181650-143182465)
               


               
               650-1041, gnl|bosTau2|chr3 (15366540-15366922)
               

               
               650-1041, gnl|Hg17|chr1 (143182540-143182939)
               

               
               650-1041, gnl|Mm7|chr3 (96671986-96672351)
               


               
               1070-1452, gnl|bosTau2|chr3 (15366922-15367289)
               

               
               1070-1452, gnl|Hg17|chr1 (143182939-143183620)
               

               
               1070-1452, gnl|Mm7|chr3 (96672351-96672788)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-587, gnl|bosTau2|chr3 (15365882-15366502)
               

               
               2-587, gnl|Hg17|chr1 (143181650-143182465)
               


               
               650-1041, gnl|bosTau2|chr3 (15366540-15366922)
               

               
               650-1041, gnl|Hg17|chr1 (143182540-143182939)
               

               
               650-1041, gnl|Mm7|chr3 (96671986-96672351)
               


               
               1070-1452, gnl|bosTau2|chr3 (15366922-15367289)
               

               
               1070-1452, gnl|Hg17|chr1 (143182939-143183620)
               

               
               1070-1452, gnl|Mm7|chr3 (96672351-96672788)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               clu (0.478583)
               

               
               liv (0.438853)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               liv (0.438853)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

	2-587, gnl\|bosTau2\|chr3 (15365882-15366502)
	2-587, gnl\|Hg17\|chr1 (143181650-143182465)

	650-1041, gnl\|bosTau2\|chr3 (15366540-15366922)
	650-1041, gnl\|Hg17\|chr1 (143182540-143182939)
	650-1041, gnl\|Mm7\|chr3 (96671986-96672351)

	1070-1452, gnl\|bosTau2\|chr3 (15366922-15367289)
	1070-1452, gnl\|Hg17\|chr1 (143182939-143183620)
	1070-1452, gnl\|Mm7\|chr3 (96672351-96672788)

	clu (0.478583)
	liv (0.438853)
	bfe (0.149858)
	ski (0.146735)
	ssp (0.13552)
	lyg (0.133103)
	tra (0.123092)