Non-Coding RNA Search

Ss1.1-rpliv0131_j21.5

Sequence:


               
               AACCTGAGCCACAGCAGAGACCTGAGCCACTGCAGTGACAATGCCCGATCCTTAACCCAC
TGCACCACAAGGGAACTCCCAATAATCACCATTTTTTTGTTAGGTGAAAATGGAATGCTG
CCTGTTGTATATATCTTAATTAATATAGAATTATAAAATATACTGCCAGACACCAAGAGG
AATGATGATTTAACTGTACCTATCCACAACTGTACCTCATTTCCGGTTGGAAAACTTCCA
GGGGTGTCAGAAAATGGTACAGCTCCCAAAGGTTCAGTGACAATGATATGCCAAGGAGTA
CATGTGTGAACTTTAGAGAAAGTTGAATGGGCATAAAAGCTACTCTTGGTGTGATTGTTC
ATTTTACAATAAACTGCCATTAATTACTATGCCCTCACCCAGCTTGTGTGTGATTGAAAA
AGGAAGAAAACTGATTTTCAAGCAATTTTTTAGACAGAACTCTAACCTAAAGGACTACGT
GTGTCTAATAAACTGATACCATGTCAGCTGGAGTTATCAAAAATTGAATATAATCAAAAC
AATATATAAAACAAGAATTATTTTGTACAAATTACGGTACTTTCGGAGTTCACGGGCACC
ATTTTTTCTCACGCAGTGGCATCAAGCCATTGTTTTGTGCCATTTAGGAGAGAAAAAGAA
TGCAGGCTGTATGATTTTAGCTCAGTGTCTGACCCAAAGCAATATGTTTGTAAGAAAATG
TTTGACATACTAATTATTTTATATCATTTAAAGCATACTGTAGCAACTTGTTTGTTTAAT
ATATGTGGTTAACTTTTGGAATTATTTTTACAATTTCCAACCAAAGTACTGTATTTTATA
TAATTTATTGTGAGGACCTTATTATGGAAACCAATAGAAGACAAACTGGGGGCAAATACC
ACATTAATCTGTATTATCGGTTTCTTCTGGACACTGTGCTAATGTGAATTTAAAATGATC
TGAACAGTCTTCTGATCTCGGATATTGCAGTACTGATGACAATTTAGTTCTGATTTGATC
ACAAAGGAGTAGCTAATATTTTATTTATAAAGCAAATATTCATAATGATGAGAAAATAGG
ACAGAAAATCACTTAAGTCCCTTCTGACTTAAAATGTTCCTTTGAAAAGTTTGCCCTAAG
GTGTTTAAAAATATTGCATAAGGAAGATTCTGCTCCAAATAAAGTTACAGTTTAAGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTGAGCCACAGCAGAGACCTGAGCCACTGCAGTGACAATGCCCGATCCTTAACCCAC
TGCACCACAAGGGAACTCCCAATAATCACCATTTTTTTGTTAGGTGAAAATGGAATGCTG
CCTGTTGTATATATCTTAATTAATATAGAATTATAAAATATACTGCCAGACACCAAGAGG
AATGATGATTTAACTGTACCTATCCACAACTGTACCTCATTTCCGGTTGGAAAACTTCCA
GGGGTGTCAGAAAATGGTACAGCTCCCAAAGGTTCAGTGACAATGATATGCCAAGGAGTA
CATGTGTGAACTTTAGAGAAAGTTGAATGGGCATAAAAGCTACTCTTGGTGTGATTGTTC
ATTTTACAATAAACTGCCATTAATTACTATGCCCTCACCCAGCTTGTGTGTGATTGAAAA
AGGAAGAAAACTGATTTTCAAGCAATTTTTTAGACAGAACTCTAACCTAAAGGACTACGT
GTGTCTAATAAACTGATACCATGTCAGCTGGAGTTATCAAAAATTGAATATAATCAAAAC
AATATATAAAACAAGAATTATTTTGTACAAATTACGGTACTTTCGGAGTTCACGGGCACC
ATTTTTTCTCACGCAGTGGCATCAAGCCATTGTTTTGTGCCATTTAGGAGAGAAAAAGAA
TGCAGGCTGTATGATTTTAGCTCAGTGTCTGACCCAAAGCAATATGTTTGTAAGAAAATG
TTTGACATACTAATTATTTTATATCATTTAAAGCATACTGTAGCAACTTGTTTGTTTAAT
ATATGTGGTTAACTTTTGGAATTATTTTTACAATTTCCAACCAAAGTACTGTATTTTATA
TAATTTATTGTGAGGACCTTATTATGGAAACCAATAGAAGACAAACTGGGGGCAAATACC
ACATTAATCTGTATTATCGGTTTCTTCTGGACACTGTGCTAATGTGAATTTAAAATGATC
TGAACAGTCTTCTGATCTCGGATATTGCAGTACTGATGACAATTTAGTTCTGATTTGATC
ACAAAGGAGTAGCTAATATTTTATTTATAAAGCAAATATTCATAATGATGAGAAAATAGG
ACAGAAAATCACTTAAGTCCCTTCTGACTTAAAATGTTCCTTTGAAAAGTTTGCCCTAAG
GTGTTTAAAAATATTGCATAAGGAAGATTCTGCTCCAAATAAAGTTACAGTTTAAGAAAA
AAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               969-1202, gnl|bosTau2|chr14 (7188339-7188092)
               

               
               969-1202, gnl|Hg17|chr6 (52974313-52974060)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               969-1202, gnl|bosTau2|chr14 (7188339-7188092)
               

               
               969-1202, gnl|Hg17|chr6 (52974313-52974060)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               liv (0.438853)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	969-1202, gnl\|bosTau2\|chr14 (7188339-7188092)
	969-1202, gnl\|Hg17\|chr6 (52974313-52974060)

	liv (0.438853)
	mgp (0.230681)
	mgm (0.180343)
	nje (0.16592)
	lin (0.145603)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	ecc (0.115035)