Non-Coding RNA Search

Ss1.1-rpliv0131_n13.5

Sequence:


               
               GGGAAAATGACCCACTGTGGCTCTCAGAAGTATTTATGTATCATCTCTAAATCCTCTAAG
GGAAGCACCTTTTCTTGAACCTGGCAGAAGAGTTGAAATCCACTTTCCATTATTATCTTG
TGAAAAACAGGGACAGATTTTCTCCCTAGCCCAGTAGGGTTTGACCTCAATTAGTATGGT
GCTTTGGGTGAGGACCTCTTCCTGGTTATCCCACTTTCTTGTAAACAGCTAAAAATCCTG
GGAGTCTCTACTGTTAAGCTGCCCTTAAAGGATAAAGCAGGGACCACCTCTCTCAGTGGG
TCCATATTTCTTTTAAAATTAGCTATCTATAGAAACTAACAGCAGTAGTTTCAGTCTTCT
AAGATAACTATTTCATTTGGTACCCATTGTGTAAAATATTGATCAACGTTCTCAAGCTCC
TCTACATCAAATTGCCTTTGTCTAGATGTTTCAACTTCAGTTTATAAAGCTTACTAGTTT
TCAGAGAAGAATGTAAAAATTTTTTCTAAGGTAAATGGAATGGCAGGAACTAGCATAAGT
GATTATCATTATTCCTGGGAGACAGGTATAATTTACAACGATTTAGGGATGTTCCAGGTA
GCCTGCTGTTTTTCAACTTCCCAGGCACTATTGTCATCTCACATCATAATTATATACTCC
TTGTCATAGGAGAAATGATGCACATATGTGATTATAGTTCACCAGATTTCTGTTAAAACC
ATGATAGTAATCAAAAGCCTAATATTGATAAACTACTCCTTTTTCCTCGTTTTAGAATGA
TACAGAGATTTCAGATAAACTCTGCAGCATCAACGTTAACACGTAGCTGGAATCTGAATT
CTGAGGAAAACTAAAAAGCTTAACAAATTTTTAGGGAATTTTTATTTTTCAAATCTTAAT
TTGAAGTGATATGTGCCTCTGTGTGATGATAACATCAAAGCAATTCAGAAACCAGTTTTC
TACCATTTTAGTTGAAAGATAACAGTAGATATATTGGGATGCTTATATAATTTTAATTTA
ATTTTAGAGTAAACCTCTACTTCTGCATCATACCCTTTGTAGATAATGGAACCTATTTAG
TTCAGACATTCTTTGTGGTATATGAGATAATGTATGAGAAAAGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAATGACCCACTGTGGCTCTCAGAAGTATTTATGTATCATCTCTAAATCCTCTAAG
GGAAGCACCTTTTCTTGAACCTGGCAGAAGAGTTGAAATCCACTTTCCATTATTATCTTG
TGAAAAACAGGGACAGATTTTCTCCCTAGCCCAGTAGGGTTTGACCTCAATTAGTATGGT
GCTTTGGGTGAGGACCTCTTCCTGGTTATCCCACTTTCTTGTAAACAGCTAAAAATCCTG
GGAGTCTCTACTGTTAAGCTGCCCTTAAAGGATAAAGCAGGGACCACCTCTCTCAGTGGG
TCCATATTTCTTTTAAAATTAGCTATCTATAGAAACTAACAGCAGTAGTTTCAGTCTTCT
AAGATAACTATTTCATTTGGTACCCATTGTGTAAAATATTGATCAACGTTCTCAAGCTCC
TCTACATCAAATTGCCTTTGTCTAGATGTTTCAACTTCAGTTTATAAAGCTTACTAGTTT
TCAGAGAAGAATGTAAAAATTTTTTCTAAGGTAAATGGAATGGCAGGAACTAGCATAAGT
GATTATCATTATTCCTGGGAGACAGGTATAATTTACAACGATTTAGGGATGTTCCAGGTA
GCCTGCTGTTTTTCAACTTCCCAGGCACTATTGTCATCTCACATCATAATTATATACTCC
TTGTCATAGGAGAAATGATGCACATATGTGATTATAGTTCACCAGATTTCTGTTAAAACC
ATGATAGTAATCAAAAGCCTAATATTGATAAACTACTCCTTTTTCCTCGTTTTAGAATGA
TACAGAGATTTCAGATAAACTCTGCAGCATCAACGTTAACACGTAGCTGGAATCTGAATT
CTGAGGAAAACTAAAAAGCTTAACAAATTTTTAGGGAATTTTTATTTTTCAAATCTTAAT
TTGAAGTGATATGTGCCTCTGTGTGATGATAACATCAAAGCAATTCAGAAACCAGTTTTC
TACCATTTTAGTTGAAAGATAACAGTAGATATATTGGGATGCTTATATAATTTTAATTTA
ATTTTAGAGTAAACCTCTACTTCTGCATCATACCCTTTGTAGATAATGGAACCTATTTAG
TTCAGACATTCTTTGTGGTATATGAGATAATGTATGAGAAAAGTGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1008-1127, - strand, RNAz p=0.52944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1008-1127, - strand, RNAz p=0.52944

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1127, gnl|bosTau2|chr1 (51807007-51808129)
               

               
               1-1127, gnl|Hg17|chr3 (184880500-184881779)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1127, gnl|bosTau2|chr1 (51807007-51808129)
               

               
               1-1127, gnl|Hg17|chr3 (184880500-184881779)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

	1-1127, gnl\|bosTau2\|chr1 (51807007-51808129)
	1-1127, gnl\|Hg17\|chr3 (184880500-184881779)