Non-Coding RNA Search

Ss1.1-rpliv0132_m13.5

Sequence:


               
               GTAAAATCTACCTGTCCACTGTGAATCCAAGCCTGAATCACTCTATTTAACCTTGGACAC
ATGAACAAGGTTTTATTTTGACTGTTTGGTTTCTCCCATGTAGTAAAATTCCTCTTCCTT
TACTCCTCCTACCCCCAAGATTTAAAAAAACAAAAAAACAAAAAAACAAAAAAACAAAAA
CAAAAAACAAAAAAACATACACACACACAAAAGACAGAAGACAAAAGAAGGGAACTGTGA
GAGGATTGTAATTGGCTTAACAGAAACAGTCTATGGAAACGGAACAGTGGTGCAATCATG
TTGTCTGTGTTGTGTGATGTGAGGATTTCCTCCTAAGTCATGCAGGTTATGACAGTATAC
TGTAAATATTACATGTGAGTTTACCTGAATCTGTGCATTTTGTGCCTTATTCATGAGAAT
GATCGAAGTACTCAAATATGTCAAGTGTTTTCGGTATAGCACATCATTTCCTGAGTGCCA
GTTGTAAATGTTTTTCAACCAGCACCTGAAAAGACTTTTCAAAAACCGTAAAAACAACCT
AGAACCATTCATTGTAAAACAAATCCACCCAGATAGCTGCATTACATCCTTTTGCCATGA
TAAACATTCCACTCCCGCTTTCCTAAGGATGAAACAGTGATAATGTGAAGTCAGATGAGG
TTTCCCAGGTAATGTGACACCTGTGGAAACCGTAGAGTCCTCTATTTGTAGTTTTGCAGA
AATCACTTACAGTTGATGATGTGGAACCCTGATGACTGTTTCAGTTAATATGCTGCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAATCTACCTGTCCACTGTGAATCCAAGCCTGAATCACTCTATTTAACCTTGGACAC
ATGAACAAGGTTTTATTTTGACTGTTTGGTTTCTCCCATGTAGTAAAATTCCTCTTCCTT
TACTCCTCCTACCCCCAAGATTTAAAAAAACAAAAAAACAAAAAAACAAAAAAACAAAAA
CAAAAAACAAAAAAACATACACACACACAAAAGACAGAAGACAAAAGAAGGGAACTGTGA
GAGGATTGTAATTGGCTTAACAGAAACAGTCTATGGAAACGGAACAGTGGTGCAATCATG
TTGTCTGTGTTGTGTGATGTGAGGATTTCCTCCTAAGTCATGCAGGTTATGACAGTATAC
TGTAAATATTACATGTGAGTTTACCTGAATCTGTGCATTTTGTGCCTTATTCATGAGAAT
GATCGAAGTACTCAAATATGTCAAGTGTTTTCGGTATAGCACATCATTTCCTGAGTGCCA
GTTGTAAATGTTTTTCAACCAGCACCTGAAAAGACTTTTCAAAAACCGTAAAAACAACCT
AGAACCATTCATTGTAAAACAAATCCACCCAGATAGCTGCATTACATCCTTTTGCCATGA
TAAACATTCCACTCCCGCTTTCCTAAGGATGAAACAGTGATAATGTGAAGTCAGATGAGG
TTTCCCAGGTAATGTGACACCTGTGGAAACCGTAGAGTCCTCTATTTGTAGTTTTGCAGA
AATCACTTACAGTTGATGATGTGGAACCCTGATGACTGTTTCAGTTAATATGCTGCACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               644-759, - strand, RNAz p=0.746051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               644-759, - strand, RNAz p=0.746051

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-780, gnl|bosTau2|chr10 (43491800-43491202)
               

               
               183-780, gnl|Hg17|chr15 (45852350-45852946)
               

               
               183-780, gnl|Mm7|chr2 (124407306-124407891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-780, gnl|bosTau2|chr10 (43491800-43491202)
               

               
               183-780, gnl|Hg17|chr15 (45852350-45852946)
               

               
               183-780, gnl|Mm7|chr2 (124407306-124407891)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ese (0.126502)

	183-780, gnl\|bosTau2\|chr10 (43491800-43491202)
	183-780, gnl\|Hg17\|chr15 (45852350-45852946)
	183-780, gnl\|Mm7\|chr2 (124407306-124407891)