Non-Coding RNA Search

Ss1.1-rpliv0133_b23.5

Sequence:


               
               GTGTCAAGACCTGTGACAACTGGAATGAAATTGGTCCCTGCAATAAGCCATGTGTTGCCG
GTTGTCACTGTCCAGCAAACCTGGTTCTTCATAAGGGAAGGTGCATCAAGCCAGTCCTTT
GTCCTCAGCGGTGACCTTTGTTCCATTCCTTCAGACTTTGAACCTGGTGTCCTTGACACT
GACGTGAAAGAGCCAATGAAAGACTGCAGTATTTGTGTGCTGATTCTGCAAACACACACA
GAGTATGTATGTGTACATATATAGATATATAGATATATTCAGAAACATTTCATCATTTAT
ATAAACTATAGGTGGATTATTATATGTATATTTTTTGCTATAAGACATGTATTGTTTCTA
GTCTGAAAGCCATTGAATACGTTGTATAAATAGACCAGGTGTTTTTAATTTAATAAGGCA
GCATGCGGACATACTGGATGGCTTTACCATCACATACATTTGTCATTTTTAAGGAAGTTT
TCTAAGAAATCTAAATTGCCTGCCTGAATTAATTTTAGCTTTGAGTCCAGATTTGCAGTT
GAGTGGGAAGTGTGTTTTTCAGGAGAAGGACAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCAAGACCTGTGACAACTGGAATGAAATTGGTCCCTGCAATAAGCCATGTGTTGCCG
GTTGTCACTGTCCAGCAAACCTGGTTCTTCATAAGGGAAGGTGCATCAAGCCAGTCCTTT
GTCCTCAGCGGTGACCTTTGTTCCATTCCTTCAGACTTTGAACCTGGTGTCCTTGACACT
GACGTGAAAGAGCCAATGAAAGACTGCAGTATTTGTGTGCTGATTCTGCAAACACACACA
GAGTATGTATGTGTACATATATAGATATATAGATATATTCAGAAACATTTCATCATTTAT
ATAAACTATAGGTGGATTATTATATGTATATTTTTTGCTATAAGACATGTATTGTTTCTA
GTCTGAAAGCCATTGAATACGTTGTATAAATAGACCAGGTGTTTTTAATTTAATAAGGCA
GCATGCGGACATACTGGATGGCTTTACCATCACATACATTTGTCATTTTTAAGGAAGTTT
TCTAAGAAATCTAAATTGCCTGCCTGAATTAATTTTAGCTTTGAGTCCAGATTTGCAGTT
GAGTGGGAAGTGTGTTTTTCAGGAGAAGGACAGATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               160-275, - strand, RNAz p=0.936901

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-275, - strand, RNAz p=0.936901

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-576, gnl|bosTau2|chr4 (35527930-35528517)
               

               
               1-576, gnl|Hg17|chr7 (33965992-33966575)
               

               
               1-576, gnl|Mm7|chr9 (23363064-23363628)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr4 (35527930-35528517)
               

               
               1-576, gnl|Hg17|chr7 (33965992-33966575)
               

               
               1-576, gnl|Mm7|chr9 (23363064-23363628)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               clu (0.119646)

	1-576, gnl\|bosTau2\|chr4 (35527930-35528517)
	1-576, gnl\|Hg17\|chr7 (33965992-33966575)
	1-576, gnl\|Mm7\|chr9 (23363064-23363628)