Non-Coding RNA Search

Ss1.1-rpliv0134_b13.5

Sequence:


               
               AAAGTAATACCTGAAAAAAATGTGGATTTTTTTTTTCTGTCACCCCCCTCCAGGTTTTTT
CTTTAAGTATTATTCTTAGATTTTCCCAAAATACAGGGTGAAATTGTGTGCATGCTGTAC
TATGTGGTTACTTTTAAAATGAAATCTTTGTCACATCTTGTTCCAACCCCATACTGCATA
GCATCTGGTGTCATGACTTCAGAAATCTCGTGTGTTTGCATGTGATAGATTGAAAAGTCT
CAAACTGTCCAGCTTTAAACAATGGTCTTCTTCCTTTTACATTAATGATTTTTTAAATAT
TCAAATTTGTTTTTGTTTTTTTCCCCTCAGGTTTGGAATTGTATTCAATGGTGCCATCTA
TTTGTCCTCTAGAAACTCTTCACAATGCCCTATCTTTAAAGCAGGTGGATGAATTTCTTG
CTTCCATTGCTTCTCCGTCAAGTGAAGTTCCATGGAAGACCCCTGAAATTTCCTCTTCAA
CTTCACGTCCTAGTCCAGTAATGAGAAGAAAAGTATCTTTAAATACATATACACCAGCAA
AGATCCTCCCAACGCCACCAGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTAATACCTGAAAAAAATGTGGATTTTTTTTTTCTGTCACCCCCCTCCAGGTTTTTT
CTTTAAGTATTATTCTTAGATTTTCCCAAAATACAGGGTGAAATTGTGTGCATGCTGTAC
TATGTGGTTACTTTTAAAATGAAATCTTTGTCACATCTTGTTCCAACCCCATACTGCATA
GCATCTGGTGTCATGACTTCAGAAATCTCGTGTGTTTGCATGTGATAGATTGAAAAGTCT
CAAACTGTCCAGCTTTAAACAATGGTCTTCTTCCTTTTACATTAATGATTTTTTAAATAT
TCAAATTTGTTTTTGTTTTTTTCCCCTCAGGTTTGGAATTGTATTCAATGGTGCCATCTA
TTTGTCCTCTAGAAACTCTTCACAATGCCCTATCTTTAAAGCAGGTGGATGAATTTCTTG
CTTCCATTGCTTCTCCGTCAAGTGAAGTTCCATGGAAGACCCCTGAAATTTCCTCTTCAA
CTTCACGTCCTAGTCCAGTAATGAGAAGAAAAGTATCTTTAAATACATATACACCAGCAA
AGATCCTCCCAACGCCACCAGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26342510|dbj|BAC34917.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26342510|dbj|BAC34917.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               354-471, + strand, RNAz p=0.561362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-471, + strand, RNAz p=0.561362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               59-471, gnl|bosTau2|chr7 (64977893-64978312)
               

               
               59-471, gnl|Hg17|chr5 (102554165-102554582)
               

               
               59-471, gnl|Mm7|chr1 (97565600-97565200)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-471, gnl|bosTau2|chr7 (64977893-64978312)
               

               
               59-471, gnl|Hg17|chr5 (102554165-102554582)
               

               
               59-471, gnl|Mm7|chr1 (97565600-97565200)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               jca (0.11396)

	59-471, gnl\|bosTau2\|chr7 (64977893-64978312)
	59-471, gnl\|Hg17\|chr5 (102554165-102554582)
	59-471, gnl\|Mm7\|chr1 (97565600-97565200)