Ss1.1-rpliv0134_f21.5
|
TTACCAGATCCTCTGCTGCGGGATTACTGGGTTTACGAAGGCTCCCTCACTATCCCGCCT
TGCAGTGAAGGTGTGACCTGGATATTATTCCGATACCCTTTGACGATATCCCAGCTACAG
ATTGAAGAATTTCGAAGGCTGAGAACACACGTGAAGGGGGCAGAGCTTGTGGAAGGCTGT
GATGGGATTTTGGGAGACAACTTTAGACCCACTCAGCCACTCAGCGACAGAGTCATTAGA
GCTGCATTTCAATAGCCAACGACAGTGGACCCGGTGTGTCTCCATCCGGGAGGAAGACAA
TGGTCCTCTAGTGCCCTTGGATGAGAAACGGAGACTTTGACCTGCAGCTTCAGTTTATCC
TCAAAGCCTGCATTGTTTGTCTTCATCTAATCCAACTTTGATGGACATCTGTGACAGCTG
CCTGTACACATGCTCTAATGAAATATTAGAAATGGCTGTACCTTCAAAAGAAACCCCGTA
TTATATATCCACATCACCGCTGCTAGTCTTCATATTTTTGCACATACAGTTTATTGCTTA
TGTGTAGAAGAAATGAAACTAGTTTTCGGAGTTATTATTAATATGAATATATATCATGTA
TTAATACTGAGACAGGAAAAATACATTGCCAGCCTTAGCAGTCCTTCATTTCCTGTCTCC
AACAGAAAATTCACTCATTCGGAGAATAATGCAATTCTTGATAATAAAATGCAAGTTCTG
ATCAAGAACAGCATACAGCTTCAAAATGGAATGTGAAGGATTAGTAAAAATCCTCTCCCA
TGTTACTTTTCAGCCCTCACCATGATTAATGTCCGGGTGATTTGTTATGATTTGTGAGTT
AATGCGCAAACCTGATAATCACTTTATATATTAATTTCTTAGCTAAAGGGTTTAATTGAA
TCTAGGATTCTAATCATATTTATTTGACGTATTAGAAGCCGTGGTTTCTAGGACTTTGAG
AAAGGTATAATAAATAAATAGAGTAAAAAAGTGGACACTTTATTTTTATTTTATAGCTTT
ATTTTCCACGATAGAAGCATATATTTAATAGTACTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTACCAGATCCTCTGCTGCGGGATTACTGGGTTTACGAAGGCTCCCTCACTATCCCGCCT
TGCAGTGAAGGTGTGACCTGGATATTATTCCGATACCCTTTGACGATATCCCAGCTACAG
ATTGAAGAATTTCGAAGGCTGAGAACACACGTGAAGGGGGCAGAGCTTGTGGAAGGCTGT
GATGGGATTTTGGGAGACAACTTTAGACCCACTCAGCCACTCAGCGACAGAGTCATTAGA
GCTGCATTTCAATAGCCAACGACAGTGGACCCGGTGTGTCTCCATCCGGGAGGAAGACAA
TGGTCCTCTAGTGCCCTTGGATGAGAAACGGAGACTTTGACCTGCAGCTTCAGTTTATCC
TCAAAGCCTGCATTGTTTGTCTTCATCTAATCCAACTTTGATGGACATCTGTGACAGCTG
CCTGTACACATGCTCTAATGAAATATTAGAAATGGCTGTACCTTCAAAAGAAACCCCGTA
TTATATATCCACATCACCGCTGCTAGTCTTCATATTTTTGCACATACAGTTTATTGCTTA
TGTGTAGAAGAAATGAAACTAGTTTTCGGAGTTATTATTAATATGAATATATATCATGTA
TTAATACTGAGACAGGAAAAATACATTGCCAGCCTTAGCAGTCCTTCATTTCCTGTCTCC
AACAGAAAATTCACTCATTCGGAGAATAATGCAATTCTTGATAATAAAATGCAAGTTCTG
ATCAAGAACAGCATACAGCTTCAAAATGGAATGTGAAGGATTAGTAAAAATCCTCTCCCA
TGTTACTTTTCAGCCCTCACCATGATTAATGTCCGGGTGATTTGTTATGATTTGTGAGTT
AATGCGCAAACCTGATAATCACTTTATATATTAATTTCTTAGCTAAAGGGTTTAATTGAA
TCTAGGATTCTAATCATATTTATTTGACGTATTAGAAGCCGTGGTTTCTAGGACTTTGAG
AAAGGTATAATAAATAAATAGAGTAAAAAAGTGGACACTTTATTTTTATTTTATAGCTTT
ATTTTCCACGATAGAAGCATATATTTAATAGTACTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
118-258, gnl|bosTau2|chr14 (12209088-12208948) |
|
118-258, gnl|canFam2|chr29 (13701817-13701986) |
|
118-258, gnl|danRer3|chr2 (10697725-10697886) |
|
118-258, gnl|dasNov1|scaffold_2131 (460-629) |
|
118-258, gnl|echTel1|scaffold_297469 (3477-3308) |
|
118-258, gnl|fr1|chrUn (146054882-146054713) |
|
118-258, gnl|galGal2|chrUn (13186688-13186519) |
|
118-258, gnl|hg17|chr8 (61283897-61284066) |
|
118-258, gnl|Hg17|chr8 (61284035-61283895) |
|
118-258, gnl|loxAfr1|scaffold_19622 (7700-7531) |
|
118-258, gnl|mm7|chr4 (8096777-8096946) |
|
118-258, gnl|Mm7|chr4 (8096915-8096775) |
|
118-258, gnl|monDom2|scaffold_4 (102792219-102792050) |
|
118-258, gnl|oryCun1|scaffold_203681 (86367-86198) |
|
118-258, gnl|panTro1|chr7 (63050888-63051057) |
|
118-258, gnl|rheMac2|chr8 (62790812-62790981) |
|
118-258, gnl|rn3|chr5 (21980919-21981088) |
|
118-258, gnl|tetNig1|chrUn_random (89788899-89789048) |
|
118-258, gnl|xenTro1|scaffold_8 (3840920-3841089) |
| |
|
289-1053, gnl|bosTau2|chr14 (12191482-12190715) |
|
289-1053, gnl|Hg17|chr8 (61265099-61264329) |
|
289-1053, gnl|Mm7|chr4 (8073364-8072640) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
118-258, gnl|bosTau2|chr14 (12209088-12208948) |
|
118-258, gnl|canFam2|chr29 (13701817-13701986) |
|
118-258, gnl|danRer3|chr2 (10697725-10697886) |
|
118-258, gnl|dasNov1|scaffold_2131 (460-629) |
|
118-258, gnl|echTel1|scaffold_297469 (3477-3308) |
|
118-258, gnl|fr1|chrUn (146054882-146054713) |
|
118-258, gnl|galGal2|chrUn (13186688-13186519) |
|
118-258, gnl|hg17|chr8 (61283897-61284066) |
|
118-258, gnl|Hg17|chr8 (61284035-61283895) |
|
118-258, gnl|loxAfr1|scaffold_19622 (7700-7531) |
|
118-258, gnl|mm7|chr4 (8096777-8096946) |
|
118-258, gnl|Mm7|chr4 (8096915-8096775) |
|
118-258, gnl|monDom2|scaffold_4 (102792219-102792050) |
|
118-258, gnl|oryCun1|scaffold_203681 (86367-86198) |
|
118-258, gnl|panTro1|chr7 (63050888-63051057) |
|
118-258, gnl|rheMac2|chr8 (62790812-62790981) |
|
118-258, gnl|rn3|chr5 (21980919-21981088) |
|
118-258, gnl|tetNig1|chrUn_random (89788899-89789048) |
|
118-258, gnl|xenTro1|scaffold_8 (3840920-3841089) |
| |
|
289-1053, gnl|bosTau2|chr14 (12191482-12190715) |
|
289-1053, gnl|Hg17|chr8 (61265099-61264329) |
|
289-1053, gnl|Mm7|chr4 (8073364-8072640) |
|
pro (0.512033) |
|
liv (0.438853) |
|
ret (0.257467) |
|
tra (0.246184) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
kid (0.129735) |
|
spc (0.113366) |
|
pro (0.512033) |
|
liv (0.438853) |
|
ret (0.257467) |
|
tra (0.246184) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
kid (0.129735) |
|
spc (0.113366) |
