Non-Coding RNA Search

Ss1.1-rpliv0134_o21.5

Sequence:


               
               TTTAACATAAATGACCGCATTAAGGAACTAGGTACTTTGATTCCCAAGTCAAATGATCCA
GACATGCGCTGGAACAAGGGAACCATTTTAAAAGCCTCCGTGGATTATATCCGAAAGTTG
CAACGGGAACAGCAACGCGCAAAAGAGCTTGAAAACAGACAGAAGAAGCTGGAGCACGCC
AATCGGCATTTGTTACTCAGAATACAGGAACTTGAAATGCAGGCTCGAGCTCATGGACTT
TCCCTCATCCCATCCACGGGTCTCTGCTCTCCAGATTTGGTGAATCGGATCATCAAGCAG
GAACCTACCCTGGAGAACTGCAGCCAAGACCTCCTCCAGCATCACGCAGACCTGACATGT
ACAACCACCCTGGATCTCACAGATGGCACCATCACCTTCAACAACAACCTCGGAACCGGG
TCTGAGGGCAACCCAGCCTATAGCGTCCCCACGAAAATGGGATCCAAACTGGAAGACATC
CTCATGGATGATACTCTTTCTCCTGTTGGCATAACTGACCCACTTCTTTCTTCGGTGTCC
CCCGGAGCATCCAAAACCAGCAGCCGAAGGAGCAGTATGAGCATGGAAGAAACCGAGCAT
GCTTGCTAGCAAATTCTCCCTGCTCTGCATTCTCACAAACTGCTTCCTTTCTTGATTAGC
AGATTTAATAATTTACCTGAAGGGGTTTTCTTGATCATTTTCCTTTAATATGAAAAAAAT
TTTTTTTCATGCTTTATCAATAGCCCAGGATATATTTTATTTTTAGAATTTTGTGAAACA
GACTTGTATATTCTATTTTACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAACATAAATGACCGCATTAAGGAACTAGGTACTTTGATTCCCAAGTCAAATGATCCA
GACATGCGCTGGAACAAGGGAACCATTTTAAAAGCCTCCGTGGATTATATCCGAAAGTTG
CAACGGGAACAGCAACGCGCAAAAGAGCTTGAAAACAGACAGAAGAAGCTGGAGCACGCC
AATCGGCATTTGTTACTCAGAATACAGGAACTTGAAATGCAGGCTCGAGCTCATGGACTT
TCCCTCATCCCATCCACGGGTCTCTGCTCTCCAGATTTGGTGAATCGGATCATCAAGCAG
GAACCTACCCTGGAGAACTGCAGCCAAGACCTCCTCCAGCATCACGCAGACCTGACATGT
ACAACCACCCTGGATCTCACAGATGGCACCATCACCTTCAACAACAACCTCGGAACCGGG
TCTGAGGGCAACCCAGCCTATAGCGTCCCCACGAAAATGGGATCCAAACTGGAAGACATC
CTCATGGATGATACTCTTTCTCCTGTTGGCATAACTGACCCACTTCTTTCTTCGGTGTCC
CCCGGAGCATCCAAAACCAGCAGCCGAAGGAGCAGTATGAGCATGGAAGAAACCGAGCAT
GCTTGCTAGCAAATTCTCCCTGCTCTGCATTCTCACAAACTGCTTCCTTTCTTGATTAGC
AGATTTAATAATTTACCTGAAGGGGTTTTCTTGATCATTTTCCTTTAATATGAAAAAAAT
TTTTTTTCATGCTTTATCAATAGCCCAGGATATATTTTATTTTTAGAATTTTGTGAAACA
GACTTGTATATTCTATTTTACAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15282044|gb|AAK94475.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15282044|gb|AAK94475.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               536-655, - strand, RNAz p=0.508733
               

               
               565-683, - strand, RNAz p=0.605358

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-655, - strand, RNAz p=0.508733
               

               
               565-683, - strand, RNAz p=0.605358

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               206-804, gnl|bosTau2|chr22 (25499861-25499260)
               

               
               206-804, gnl|canFam2|chr20 (24854297-24853854)
               

               
               206-804, gnl|danRer3|chr23 (764320-763918)
               

               
               206-804, gnl|dasNov1|scaffold_292686 (587-150)
               

               
               206-804, gnl|echTel1|scaffold_231078 (11803-12244)
               

               
               206-804, gnl|fr1|chrUn (89058895-89059316)
               

               
               206-804, gnl|galGal2|chr12 (15413492-15413919)
               

               
               206-804, gnl|hg17|chr3 (70096655-70097092)
               

               
               206-804, gnl|Hg17|chr3 (70096686-70097280)
               

               
               206-804, gnl|loxAfr1|scaffold_20060 (41527-41097)
               

               
               206-804, gnl|mm7|chr6 (98105823-98106259)
               

               
               206-804, gnl|Mm7|chr6 (98105853-98106443)
               

               
               206-804, gnl|monDom2|scaffold_5 (17415410-17415841)
               

               
               206-804, gnl|oryCun1|scaffold_214924 (59901-59464)
               

               
               206-804, gnl|panTro1|chr2 (71907033-71907470)
               

               
               206-804, gnl|rheMac2|chr2 (66207369-66206932)
               

               
               206-804, gnl|rn3|chr4 (132989634-132990070)
               

               
               206-804, gnl|tetNig1|chr11 (10223521-10223112)
               

               
               206-804, gnl|xenTro1|scaffold_935 (285692-285282)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-804, gnl|bosTau2|chr22 (25499861-25499260)
               

               
               206-804, gnl|canFam2|chr20 (24854297-24853854)
               

               
               206-804, gnl|danRer3|chr23 (764320-763918)
               

               
               206-804, gnl|dasNov1|scaffold_292686 (587-150)
               

               
               206-804, gnl|echTel1|scaffold_231078 (11803-12244)
               

               
               206-804, gnl|fr1|chrUn (89058895-89059316)
               

               
               206-804, gnl|galGal2|chr12 (15413492-15413919)
               

               
               206-804, gnl|hg17|chr3 (70096655-70097092)
               

               
               206-804, gnl|Hg17|chr3 (70096686-70097280)
               

               
               206-804, gnl|loxAfr1|scaffold_20060 (41527-41097)
               

               
               206-804, gnl|mm7|chr6 (98105823-98106259)
               

               
               206-804, gnl|Mm7|chr6 (98105853-98106443)
               

               
               206-804, gnl|monDom2|scaffold_5 (17415410-17415841)
               

               
               206-804, gnl|oryCun1|scaffold_214924 (59901-59464)
               

               
               206-804, gnl|panTro1|chr2 (71907033-71907470)
               

               
               206-804, gnl|rheMac2|chr2 (66207369-66206932)
               

               
               206-804, gnl|rn3|chr4 (132989634-132990070)
               

               
               206-804, gnl|tetNig1|chr11 (10223521-10223112)
               

               
               206-804, gnl|xenTro1|scaffold_935 (285692-285282)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)

	536-655, - strand, RNAz p=0.508733
	565-683, - strand, RNAz p=0.605358

	206-804, gnl\|bosTau2\|chr22 (25499861-25499260)
	206-804, gnl\|canFam2\|chr20 (24854297-24853854)
	206-804, gnl\|danRer3\|chr23 (764320-763918)
	206-804, gnl\|dasNov1\|scaffold_292686 (587-150)
	206-804, gnl\|echTel1\|scaffold_231078 (11803-12244)
	206-804, gnl\|fr1\|chrUn (89058895-89059316)
	206-804, gnl\|galGal2\|chr12 (15413492-15413919)
	206-804, gnl\|hg17\|chr3 (70096655-70097092)
	206-804, gnl\|Hg17\|chr3 (70096686-70097280)
	206-804, gnl\|loxAfr1\|scaffold_20060 (41527-41097)
	206-804, gnl\|mm7\|chr6 (98105823-98106259)
	206-804, gnl\|Mm7\|chr6 (98105853-98106443)
	206-804, gnl\|monDom2\|scaffold_5 (17415410-17415841)
	206-804, gnl\|oryCun1\|scaffold_214924 (59901-59464)
	206-804, gnl\|panTro1\|chr2 (71907033-71907470)
	206-804, gnl\|rheMac2\|chr2 (66207369-66206932)
	206-804, gnl\|rn3\|chr4 (132989634-132990070)
	206-804, gnl\|tetNig1\|chr11 (10223521-10223112)
	206-804, gnl\|xenTro1\|scaffold_935 (285692-285282)

	sme (0.305437)
	hea (0.204499)
	sin (0.174948)
	liv (0.146284)
	hlv (0.139256)