Non-Coding RNA Search

Ss1.1-rpliv0135_h15.5

Sequence:


               
               GAGTAAGCCTAGGACAGCCACCCTTCACCAAGCAGCCCATGTAAACGCTCCTTCATGAGC
GAGCCATCCAAGTCATGGCTTAGTTAAGAATCTAACTGGGACGTATAGGATATTCCACTC
ATTTCCTGATCCCTTCCAGCTGCCCAATGGCATTTAGCCAACATATGTACCTTTGTGCCT
GGGTTAGGAACCCTTTAAAGATCATGTTTGTTATTACCACCCAGTTTCATTATCCTCCCA
TCCTCTTTCCATTTCCACTCTCTTCTCACTTGAATTCTGGCATTATTTTTAGTGGCCTCT
GTTGATTAAAGAGCAGATAAAAAGTATATTAAAAGTGGAAAGAGCAGTATAAATAATTTT
AGTGGATCCTATAAAGGGTGCCTCAAAATATATATTATGCCATTCCACAAATTTAAAAAC
TAATTGAAGGCAACAGTTATTTTCTTAAGTTTCCTATATGAGACCACCTTAAATTTAGAT
ATTGTACATATGCCAAAACTAAACTCTATATATCATCTTTGGTATGCTTCCCCATTATTA
ACAGTGGTTTTATTTGTTATCCACTAGAAAGACTAAGAAAGTACTGATCTTATTTCCTCC
CTGCACCCAGGTTTTTCTTCTTAAATATTCTAATTCCAGGATTCATTTCCTCAAGTCAGG
ATGTCACAAGATTAAAAATAAAACTTGAGACTCAACTGCCTTGAGGCAAAGGAGTTGTTC
ACTTTGTTGAAATTCATTAAATTGAAAAGTTTTATTCACAGACGCATTTAAATATAGGTT
CAGCAGATAATTTCTTTCCCTTTTCCCCAAATTATATTCAACATTTAGAACTGTTTATAG
CTTGCCATCAACATTATTCTGGTAGGCTTGGCAGTGTTAAATCTGTCCGTTTTATTTTTA
AAGCTTAAAATTTTTAAAGTCTAATTTTAGGATAGATGAATTCAAATATGTACGAGTATG
TATGTTGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAAGCCTAGGACAGCCACCCTTCACCAAGCAGCCCATGTAAACGCTCCTTCATGAGC
GAGCCATCCAAGTCATGGCTTAGTTAAGAATCTAACTGGGACGTATAGGATATTCCACTC
ATTTCCTGATCCCTTCCAGCTGCCCAATGGCATTTAGCCAACATATGTACCTTTGTGCCT
GGGTTAGGAACCCTTTAAAGATCATGTTTGTTATTACCACCCAGTTTCATTATCCTCCCA
TCCTCTTTCCATTTCCACTCTCTTCTCACTTGAATTCTGGCATTATTTTTAGTGGCCTCT
GTTGATTAAAGAGCAGATAAAAAGTATATTAAAAGTGGAAAGAGCAGTATAAATAATTTT
AGTGGATCCTATAAAGGGTGCCTCAAAATATATATTATGCCATTCCACAAATTTAAAAAC
TAATTGAAGGCAACAGTTATTTTCTTAAGTTTCCTATATGAGACCACCTTAAATTTAGAT
ATTGTACATATGCCAAAACTAAACTCTATATATCATCTTTGGTATGCTTCCCCATTATTA
ACAGTGGTTTTATTTGTTATCCACTAGAAAGACTAAGAAAGTACTGATCTTATTTCCTCC
CTGCACCCAGGTTTTTCTTCTTAAATATTCTAATTCCAGGATTCATTTCCTCAAGTCAGG
ATGTCACAAGATTAAAAATAAAACTTGAGACTCAACTGCCTTGAGGCAAAGGAGTTGTTC
ACTTTGTTGAAATTCATTAAATTGAAAAGTTTTATTCACAGACGCATTTAAATATAGGTT
CAGCAGATAATTTCTTTCCCTTTTCCCCAAATTATATTCAACATTTAGAACTGTTTATAG
CTTGCCATCAACATTATTCTGGTAGGCTTGGCAGTGTTAAATCTGTCCGTTTTATTTTTA
AAGCTTAAAATTTTTAAAGTCTAATTTTAGGATAGATGAATTCAAATATGTACGAGTATG
TATGTTGCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               844-972, - strand, RNAz p=0.645022

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               844-972, - strand, RNAz p=0.645022

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-972, gnl|bosTau2|chr5 (26975142-26974172)
               

               
               3-972, gnl|Hg17|chr12 (41127494-41128511)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-972, gnl|bosTau2|chr5 (26975142-26974172)
               

               
               3-972, gnl|Hg17|chr12 (41127494-41128511)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               tes (0.207814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               tes (0.207814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	3-972, gnl\|bosTau2\|chr5 (26975142-26974172)
	3-972, gnl\|Hg17\|chr12 (41127494-41128511)

	tbr (0.308356)
	sme (0.305437)
	tes (0.207814)
	cag (0.151194)
	lun (0.150489)
	liv (0.146284)
	csk (0.140746)
	ret (0.128733)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)