Non-Coding RNA Search

Ss1.1-rpliv0136_l5.5

Sequence:


               
               CCGTGGCAAGGGAGTTCGGGCCGTGTTGAGCCTCTGTCAGCAGGCGCCCAGGACTCAGCC
GCGGCCCCGGGCGGGGGGCGAGCGAGGCGGCCCGCACCCCGCCTGCCTGTTCATTTCCAC
CCTGAAGGACAAGCGCGGGACCCGCTATGAGCTAAAGGAGAATATTGAGCAATTCTTCAC
CAAATTTGTGGATGAGGGGAAGGCCACTGTTCGGTTAAAGGAGCCTCCTGTGGATATCTG
TCTAAGCAAGGCCAATTCCAGCAGCTTAAAGGGTTTCCTGTCAGCTGTGAGACTGGCTCA
TAGAGGCTGTGATGTTGCAGTGCCGCTTTCAACTCTCACACCAGTGAAGACTTCAGAATT
TGAAAAATTTAAAACTAAAATGGTTATCACATCCAAAAAGGACTATCCTCTAAGCAAGAA
TTTCCCATATTCTTTGGAACACCTTCAGACTTCTTATTGTGGGCTTGTCCGAGTTGATAT
GCGTATGCTTTGCTTAAAAAACCTTAAAAAATTAGACTTGAGTCATAACCATATAAAAAA
GCTTCCAGCTACAATTGGAGACCTCATACACCTTCAAGATCTTAACCTGAATGACAATCA
CTTGGAGACGTTTAGTGTCGCCTTGTGTCAGTCTACACTGCAGAAGTCACTTCGGAGTTT
GGATCTCAGCAAGAACAAAATTAAGGCACTCCCCGTGCAGTTTTGCCAATTCCAAAAACT
TACAGATTTAAAACTTGATGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGGCAAGGGAGTTCGGGCCGTGTTGAGCCTCTGTCAGCAGGCGCCCAGGACTCAGCC
GCGGCCCCGGGCGGGGGGCGAGCGAGGCGGCCCGCACCCCGCCTGCCTGTTCATTTCCAC
CCTGAAGGACAAGCGCGGGACCCGCTATGAGCTAAAGGAGAATATTGAGCAATTCTTCAC
CAAATTTGTGGATGAGGGGAAGGCCACTGTTCGGTTAAAGGAGCCTCCTGTGGATATCTG
TCTAAGCAAGGCCAATTCCAGCAGCTTAAAGGGTTTCCTGTCAGCTGTGAGACTGGCTCA
TAGAGGCTGTGATGTTGCAGTGCCGCTTTCAACTCTCACACCAGTGAAGACTTCAGAATT
TGAAAAATTTAAAACTAAAATGGTTATCACATCCAAAAAGGACTATCCTCTAAGCAAGAA
TTTCCCATATTCTTTGGAACACCTTCAGACTTCTTATTGTGGGCTTGTCCGAGTTGATAT
GCGTATGCTTTGCTTAAAAAACCTTAAAAAATTAGACTTGAGTCATAACCATATAAAAAA
GCTTCCAGCTACAATTGGAGACCTCATACACCTTCAAGATCTTAACCTGAATGACAATCA
CTTGGAGACGTTTAGTGTCGCCTTGTGTCAGTCTACACTGCAGAAGTCACTTCGGAGTTT
GGATCTCAGCAAGAACAAAATTAAGGCACTCCCCGTGCAGTTTTGCCAATTCCAAAAACT
TACAGATTTAAAACTTGATGATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CWS7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CWS7_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               528-687, + strand, RNAz p=0.553562

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-687, + strand, RNAz p=0.553562

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC064133, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC064133, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-151, gnl|bosTau2|chr10 (29961956-29962106)
               

               
               1-151, gnl|Hg17|chr14 (49135551-49135671)
               

               
               1-151, gnl|Mm7|chr12 (67110415-67110559)
               


               
               249-744, gnl|bosTau2|chr10 (29967945-29968440)
               

               
               249-744, gnl|canFam2|chr8 (29243147-29243501)
               

               
               249-744, gnl|dasNov1|scaffold_6267 (42432-42078)
               

               
               249-744, gnl|echTel1|scaffold_311793 (31956-31606)
               

               
               249-744, gnl|fr1|chrUn (134307715-134308124)
               

               
               249-744, gnl|galGal2|chr5 (54276659-54277013)
               

               
               249-744, gnl|hg17|chr14 (49143835-49144185)
               

               
               249-744, gnl|Hg17|chr14 (49143866-49144361)
               

               
               249-744, gnl|loxAfr1|scaffold_111563 (8469-8114)
               

               
               249-744, gnl|mm7|chr12 (67115852-67116206)
               

               
               249-744, gnl|Mm7|chr12 (67115887-67116382)
               

               
               249-744, gnl|monDom2|scaffold_8 (86677008-86677370)
               

               
               249-744, gnl|oryCun1|scaffold_212638 (45067-45423)
               

               
               249-744, gnl|panTro1|chr15 (48541190-48541540)
               

               
               249-744, gnl|rn3|chr6 (91132434-91132787)
               

               
               249-744, gnl|tetNig1|chr10 (5856836-5857231)
               

               
               249-744, gnl|xenTro1|scaffold_666 (414053-414411)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr10 (29961956-29962106)
               

               
               1-151, gnl|Hg17|chr14 (49135551-49135671)
               

               
               1-151, gnl|Mm7|chr12 (67110415-67110559)
               


               
               249-744, gnl|bosTau2|chr10 (29967945-29968440)
               

               
               249-744, gnl|canFam2|chr8 (29243147-29243501)
               

               
               249-744, gnl|dasNov1|scaffold_6267 (42432-42078)
               

               
               249-744, gnl|echTel1|scaffold_311793 (31956-31606)
               

               
               249-744, gnl|fr1|chrUn (134307715-134308124)
               

               
               249-744, gnl|galGal2|chr5 (54276659-54277013)
               

               
               249-744, gnl|hg17|chr14 (49143835-49144185)
               

               
               249-744, gnl|Hg17|chr14 (49143866-49144361)
               

               
               249-744, gnl|loxAfr1|scaffold_111563 (8469-8114)
               

               
               249-744, gnl|mm7|chr12 (67115852-67116206)
               

               
               249-744, gnl|Mm7|chr12 (67115887-67116382)
               

               
               249-744, gnl|monDom2|scaffold_8 (86677008-86677370)
               

               
               249-744, gnl|oryCun1|scaffold_212638 (45067-45423)
               

               
               249-744, gnl|panTro1|chr15 (48541190-48541540)
               

               
               249-744, gnl|rn3|chr6 (91132434-91132787)
               

               
               249-744, gnl|tetNig1|chr10 (5856836-5857231)
               

               
               249-744, gnl|xenTro1|scaffold_666 (414053-414411)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               liv (0.146284)

	1-151, gnl\|bosTau2\|chr10 (29961956-29962106)
	1-151, gnl\|Hg17\|chr14 (49135551-49135671)
	1-151, gnl\|Mm7\|chr12 (67110415-67110559)

	249-744, gnl\|bosTau2\|chr10 (29967945-29968440)
	249-744, gnl\|canFam2\|chr8 (29243147-29243501)
	249-744, gnl\|dasNov1\|scaffold_6267 (42432-42078)
	249-744, gnl\|echTel1\|scaffold_311793 (31956-31606)
	249-744, gnl\|fr1\|chrUn (134307715-134308124)
	249-744, gnl\|galGal2\|chr5 (54276659-54277013)
	249-744, gnl\|hg17\|chr14 (49143835-49144185)
	249-744, gnl\|Hg17\|chr14 (49143866-49144361)
	249-744, gnl\|loxAfr1\|scaffold_111563 (8469-8114)
	249-744, gnl\|mm7\|chr12 (67115852-67116206)
	249-744, gnl\|Mm7\|chr12 (67115887-67116382)
	249-744, gnl\|monDom2\|scaffold_8 (86677008-86677370)
	249-744, gnl\|oryCun1\|scaffold_212638 (45067-45423)
	249-744, gnl\|panTro1\|chr15 (48541190-48541540)
	249-744, gnl\|rn3\|chr6 (91132434-91132787)
	249-744, gnl\|tetNig1\|chr10 (5856836-5857231)
	249-744, gnl\|xenTro1\|scaffold_666 (414053-414411)