Non-Coding RNA Search

Ss1.1-rpliv0136_n20.5

Sequence:


               
               TAGGGTGAGTTAAAAGTCCCTGTGCATCTATATTAGATGGCAGGTATTGTCACAGAGTCA
CTGTGTATTAATAATAAATGTTGAGATGGCTTCTCCATGTTTCTAGAAGCATTTACATGT
ACTCTTTGTGAGATCATGGTGCACAGAGGTCTTTGGACTGCCCTGAACCCTGTCTTATGT
GGGCGTAGTCTGTTCCCCACGCTTTCCTCATGAGACCATGTGTTTAAGATCTAGCCATTT
GGTTCCAAGTTAAGATCATTCTGATTTCCATCTAAGTGTTCTTGAAATTGTATTTTGTGT
CTTTATGGAGGGCAAGTCTTGATACTGTTCTAATTCACAAAGCCACATTTTAATGTGCTT
TTGTATATCCATAAATAAAATCCTTTATAATGCCCTATTCTAATCCCATTTCAAATAGCT
AGAGTCTGATAGTATATTGATAAAAAATAAAAGTCTGCCAAGAAGTTATTGACAAACAAA
GGAATATTACAATATTGTCTGCTTTTGTTCAGAGAACTTTTTGGCATAGGCAGCACAACA
TAATGTGAAGGATTGGCTTTATAGGAAATGGAAACAGTCTGGTTAAAAACAGAAAGGGGA
AAAAAAGAGATCTTCATCCTGTAGTTTAGTCTAGATACAGTTTGGGTAAGTTTCTGGATT
CTGTTGAGTGGTGGCTTAGATAACATGGATACTACCTGTGTGTGATTTCTTAAGTATGTG
CTTCTAAAAATCTGAGCTGAAGGCAAGAAAACTGTATTCTTTTGCCGTAATAATTGCATC
AAAGTTGTTTTTTTTCTAAATCAAATATCTCATCACAGAAACATGATAGAAATCGGGAGC
TGTTTCCAGGCTTACTAGGACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGTGAGTTAAAAGTCCCTGTGCATCTATATTAGATGGCAGGTATTGTCACAGAGTCA
CTGTGTATTAATAATAAATGTTGAGATGGCTTCTCCATGTTTCTAGAAGCATTTACATGT
ACTCTTTGTGAGATCATGGTGCACAGAGGTCTTTGGACTGCCCTGAACCCTGTCTTATGT
GGGCGTAGTCTGTTCCCCACGCTTTCCTCATGAGACCATGTGTTTAAGATCTAGCCATTT
GGTTCCAAGTTAAGATCATTCTGATTTCCATCTAAGTGTTCTTGAAATTGTATTTTGTGT
CTTTATGGAGGGCAAGTCTTGATACTGTTCTAATTCACAAAGCCACATTTTAATGTGCTT
TTGTATATCCATAAATAAAATCCTTTATAATGCCCTATTCTAATCCCATTTCAAATAGCT
AGAGTCTGATAGTATATTGATAAAAAATAAAAGTCTGCCAAGAAGTTATTGACAAACAAA
GGAATATTACAATATTGTCTGCTTTTGTTCAGAGAACTTTTTGGCATAGGCAGCACAACA
TAATGTGAAGGATTGGCTTTATAGGAAATGGAAACAGTCTGGTTAAAAACAGAAAGGGGA
AAAAAAGAGATCTTCATCCTGTAGTTTAGTCTAGATACAGTTTGGGTAAGTTTCTGGATT
CTGTTGAGTGGTGGCTTAGATAACATGGATACTACCTGTGTGTGATTTCTTAAGTATGTG
CTTCTAAAAATCTGAGCTGAAGGCAAGAAAACTGTATTCTTTTGCCGTAATAATTGCATC
AAAGTTGTTTTTTTTCTAAATCAAATATCTCATCACAGAAACATGATAGAAATCGGGAGC
TGTTTCCAGGCTTACTAGGACACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.607534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.607534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr24 (7006535-7007416)
               

               
               1-863, gnl|Hg17|chr18 (66146456-66147327)
               

               
               1-863, gnl|Mm7|chr18 (89190392-89189185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr24 (7006535-7007416)
               

               
               1-863, gnl|Hg17|chr18 (66146456-66147327)
               

               
               1-863, gnl|Mm7|chr18 (89190392-89189185)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.292569)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	1-863, gnl\|bosTau2\|chr24 (7006535-7007416)
	1-863, gnl\|Hg17\|chr18 (66146456-66147327)
	1-863, gnl\|Mm7\|chr18 (89190392-89189185)