Non-Coding RNA Search

Ss1.1-rpliv0137_a22.5

Sequence:


               
               GAAGGCAAAGGTGGGACAACTAAGCCAGCCCCCAAAGACGGGGAAGCAGAACAGTATGTG
TGAACTTTATGTCCTGGCAGTATAAAAGTATAAAACCAAGGAACACTCAAACCATGGTAA
GGTTGCCGATGAGGGTGGGTCACATTTGCAAAACAGGCCAGTATGGACTGGTGTTGGAGG
GAAACTTAAAAATAATAACCACAGTGCTGCTGAAACAGACTCAACACGACTCTAATTTAA
ATATGCTTGGTTGGATTTCTTTTTCTGCATGCTTCGTATTTTGCAACTAGTTATGTGGCA
TGCAGCATTTGGAAAGGTTTTTCTTATGTACCAGTGTTTGATTTGTGACTTTTAAAATTA
ATACCGTTGCCATTGCAAAAATGAACTTGTACTTTCACAGTGGGGTATGTGTATTGTTTC
CATTGTATGATTATTATGTTTTGCATTGCAAGATCCTTGAGGTTTAACTCATCTTTGTAA
AATGTAGAAAGAGCCCTCCTATTCTTGAATGAATGACTAAGTATTAACACTTTTCAGAAT
CATAGATTCCATATTCGAGGTTGCGCAGAAACATTTGAATATGTTTTTCATGACAGTGGG
TACTAAAATTAAGTCATTTTGTTCAGCACTTTAGAACTTTCTTACAAAGTTTTGTTACAA
ATTCCAAATCTTTTTTTGGTAAACATCTATGGTCTTCTGACTTTGACCAGGCTTCCACAA
GGAACAAAATGATCGCATGGTGTCCACAGAACACTGCCGCTCTCCTACTGTGGAATGATG
TTCTAACCACTTCTCAGAGACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGCAAAGGTGGGACAACTAAGCCAGCCCCCAAAGACGGGGAAGCAGAACAGTATGTG
TGAACTTTATGTCCTGGCAGTATAAAAGTATAAAACCAAGGAACACTCAAACCATGGTAA
GGTTGCCGATGAGGGTGGGTCACATTTGCAAAACAGGCCAGTATGGACTGGTGTTGGAGG
GAAACTTAAAAATAATAACCACAGTGCTGCTGAAACAGACTCAACACGACTCTAATTTAA
ATATGCTTGGTTGGATTTCTTTTTCTGCATGCTTCGTATTTTGCAACTAGTTATGTGGCA
TGCAGCATTTGGAAAGGTTTTTCTTATGTACCAGTGTTTGATTTGTGACTTTTAAAATTA
ATACCGTTGCCATTGCAAAAATGAACTTGTACTTTCACAGTGGGGTATGTGTATTGTTTC
CATTGTATGATTATTATGTTTTGCATTGCAAGATCCTTGAGGTTTAACTCATCTTTGTAA
AATGTAGAAAGAGCCCTCCTATTCTTGAATGAATGACTAAGTATTAACACTTTTCAGAAT
CATAGATTCCATATTCGAGGTTGCGCAGAAACATTTGAATATGTTTTTCATGACAGTGGG
TACTAAAATTAAGTCATTTTGTTCAGCACTTTAGAACTTTCTTACAAAGTTTTGTTACAA
ATTCCAAATCTTTTTTTGGTAAACATCTATGGTCTTCTGACTTTGACCAGGCTTCCACAA
GGAACAAAATGATCGCATGGTGTCCACAGAACACTGCCGCTCTCCTACTGTGGAATGATG
TTCTAACCACTTCTCAGAGACACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-341, + strand, RNAz p=0.912518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-341, + strand, RNAz p=0.912518

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-802, gnl|bosTau2|chr20 (25452340-25451529)
               

               
               1-802, gnl|Hg17|chr4 (126770466-126771284)
               

               
               1-802, gnl|Mm7|chr3 (38827960-38828746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-802, gnl|bosTau2|chr20 (25452340-25451529)
               

               
               1-802, gnl|Hg17|chr4 (126770466-126771284)
               

               
               1-802, gnl|Mm7|chr3 (38827960-38828746)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	1-802, gnl\|bosTau2\|chr20 (25452340-25451529)
	1-802, gnl\|Hg17\|chr4 (126770466-126771284)
	1-802, gnl\|Mm7\|chr3 (38827960-38828746)

	clu (0.239292)
	mgp (0.230681)
	gul (0.177588)
	liv (0.146284)
	sug (0.127291)
	ese (0.126502)