Non-Coding RNA Search

Ss1.1-rpliv0137_m22.5

Sequence:


               
               TTTTTTCAGCCTAAGTAACCACACAATTTTAGGCCTCAAATTTTTTTTTTTTCTGTGAAG
GAACTTGAAGTGATGCATGTGTGAATTTAAGATACCGAAGTCTTAAAGTGACCTGGACGT
GAAGGAAAAAGTAAGATGAGAAATAAAGAAAGCCTTTGTAAGGTGGTTTTAAAAGCCTTA
TATGCAAACCTTTTAATCTGTGTGTTTCTGCAAGTGCCATCCTTGTACAGTGTTAAGAAG
GTAACGTGGGTTACCTTTGCACCAGCTTCAGTGTTAAAGCTCACCCTGTTCTTTGAAGCA
CCCATGTCAGTATTAGAAGAATAGGCAGCAGTTCCTTAGTTTACATATGTTTGTGCAATT
ATTTTCTGTACTTTTTTTGTTCATTAATTTTGTCAGTATTATACCAAACTTTTTTTGCAA
CAACAAAAAAAATTTTTTTTGCATTCATTTAATTTTAGGTCAAATAACATTTTATTTATG
TGGCTCATTTTATATTTCCTAATTTTATTTATTTCATACTGTAGTGTACAGTATTATAGT
TCTTCAATATATAGATATATTTTAGTAAAAAAGGAACATGACGTTGATCATTTGGGCAAA
TTTTACGTAAAGAGAAGAGCATTTATTGTGTTTTGGAACATTAATTGTGAGATGGGATTT
TTCAATTTTATTATTTTATTTTTGTTTTTTTCCAATTACTGGAAATTCCAAATTTGGGAA
CTTTTGATACGATCTTGTGAAAACACTGTATTTTCGACTGAAAATTCCACTTTCTTCATC
TTGTTTTTTAGCTAAAAAGAGGGACTGTTAAATACAATGTATGATACCATGACAAAAATC
TTTCCTGAATTGTCTTTGTAAAAGTATTATTGAATTTTCAATTTGTAATTTCTTTTGAAA
ATGACCATGCTCGAATAAAAATGTAGCCAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCAGCCTAAGTAACCACACAATTTTAGGCCTCAAATTTTTTTTTTTTCTGTGAAG
GAACTTGAAGTGATGCATGTGTGAATTTAAGATACCGAAGTCTTAAAGTGACCTGGACGT
GAAGGAAAAAGTAAGATGAGAAATAAAGAAAGCCTTTGTAAGGTGGTTTTAAAAGCCTTA
TATGCAAACCTTTTAATCTGTGTGTTTCTGCAAGTGCCATCCTTGTACAGTGTTAAGAAG
GTAACGTGGGTTACCTTTGCACCAGCTTCAGTGTTAAAGCTCACCCTGTTCTTTGAAGCA
CCCATGTCAGTATTAGAAGAATAGGCAGCAGTTCCTTAGTTTACATATGTTTGTGCAATT
ATTTTCTGTACTTTTTTTGTTCATTAATTTTGTCAGTATTATACCAAACTTTTTTTGCAA
CAACAAAAAAAATTTTTTTTGCATTCATTTAATTTTAGGTCAAATAACATTTTATTTATG
TGGCTCATTTTATATTTCCTAATTTTATTTATTTCATACTGTAGTGTACAGTATTATAGT
TCTTCAATATATAGATATATTTTAGTAAAAAAGGAACATGACGTTGATCATTTGGGCAAA
TTTTACGTAAAGAGAAGAGCATTTATTGTGTTTTGGAACATTAATTGTGAGATGGGATTT
TTCAATTTTATTATTTTATTTTTGTTTTTTTCCAATTACTGGAAATTCCAAATTTGGGAA
CTTTTGATACGATCTTGTGAAAACACTGTATTTTCGACTGAAAATTCCACTTTCTTCATC
TTGTTTTTTAGCTAAAAAGAGGGACTGTTAAATACAATGTATGATACCATGACAAAAATC
TTTCCTGAATTGTCTTTGTAAAAGTATTATTGAATTTTCAATTTGTAATTTCTTTTGAAA
ATGACCATGCTCGAATAAAAATGTAGCCAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               73-192, + strand, RNAz p=0.84934
               

               
               512-631, - strand, RNAz p=0.747511

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-192, + strand, RNAz p=0.84934
               

               
               512-631, - strand, RNAz p=0.747511

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014795, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014795, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-938, gnl|bosTau2|chr2 (35500813-35499881)
               

               
               1-938, gnl|Hg17|chr2 (144980241-144979312)
               

               
               1-938, gnl|Mm7|chr2 (44995374-44994429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-938, gnl|bosTau2|chr2 (35500813-35499881)
               

               
               1-938, gnl|Hg17|chr2 (144980241-144979312)
               

               
               1-938, gnl|Mm7|chr2 (44995374-44994429)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               liv (0.585137)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	73-192, + strand, RNAz p=0.84934
	512-631, - strand, RNAz p=0.747511

	1-938, gnl\|bosTau2\|chr2 (35500813-35499881)
	1-938, gnl\|Hg17\|chr2 (144980241-144979312)
	1-938, gnl\|Mm7\|chr2 (44995374-44994429)

	liv (0.585137)
	fce (0.271592)
	cbe (0.239234)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	fco (0.157208)
	ret (0.128733)
	tra (0.123092)
	med (0.116252)
	jca (0.11396)