Non-Coding RNA Search

Ss1.1-rpliv0138_a19.5

Sequence:


               
               CATCCCTTTCTAACCGAACTTCAGACTTTCTTTATTTGCAATCTGGTGAAGCAATAAAAA
GAGGAGGGTGGGGGCAGAGCCTGTCAGTTGTCTTCAAGGACAATCTGTTCTTGATCCACA
TAAACTGCTGAATGTTCTTACAAAGAAACACAGTGTAATGCCAAACTGGCTCACTCTTCT
TTTTATGTATAAGTTTCGCAGTAGATAAATAAAGTACATAATTTATCACTGAGAAATACC
CAAGACCAGATGGATATACAGTGCAGTTTTTCCCATTTCTCTGGGTATCCCCCAGTGACC
CGATGGAGGGTGTTGGCTGAAGGTCTGCATATGCCTGTGACAACAGCTGCAATATATGAC
CGTGGTGTTTCTAAGGATTAAAAACCTTTATCTAAAACTACTTCAATTACAGGCTCTAAT
GGAGAAAAAAAATTTGTTTAACTAGTGTTACACATCACCTACTTTTCTATGTGATTAGGT
CTCTCCAGCTGGAGAAAAATGTGGGAAGATAAGTTGCACTGCTTATTGTGGTAGAACTTT
CTTTAGGACAGCTATTATTATTGGATTATTATTTTAAGGAGGAGGAGTAGCAGTTGGGGT
CAACAATAGTCTAAAGTTCTACAAATGGTAAATCATTCATCAGATATGTGTTTTAGAAAA
ATAGGTTTATTTTGTCCTGAAAGTGGTATGGAGATTTTGAGGTTCTTCACGTTAATGTTA
ACATATGCTTTGTATCATATAGAAGCATAAGAGCTAATAAACTTTGCAAAGGTCAATGGA
AACGAAGATTTCTGTTTAAATGGATTTTGAATTCCATTCATTAACTTACAATACATTGCC
CCACTGGCCAAGCGAAATTTCCCCACTCTTGAATTTATCAAACACATTTCTTTTTGGAAT
CAAGTCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCCTTTCTAACCGAACTTCAGACTTTCTTTATTTGCAATCTGGTGAAGCAATAAAAA
GAGGAGGGTGGGGGCAGAGCCTGTCAGTTGTCTTCAAGGACAATCTGTTCTTGATCCACA
TAAACTGCTGAATGTTCTTACAAAGAAACACAGTGTAATGCCAAACTGGCTCACTCTTCT
TTTTATGTATAAGTTTCGCAGTAGATAAATAAAGTACATAATTTATCACTGAGAAATACC
CAAGACCAGATGGATATACAGTGCAGTTTTTCCCATTTCTCTGGGTATCCCCCAGTGACC
CGATGGAGGGTGTTGGCTGAAGGTCTGCATATGCCTGTGACAACAGCTGCAATATATGAC
CGTGGTGTTTCTAAGGATTAAAAACCTTTATCTAAAACTACTTCAATTACAGGCTCTAAT
GGAGAAAAAAAATTTGTTTAACTAGTGTTACACATCACCTACTTTTCTATGTGATTAGGT
CTCTCCAGCTGGAGAAAAATGTGGGAAGATAAGTTGCACTGCTTATTGTGGTAGAACTTT
CTTTAGGACAGCTATTATTATTGGATTATTATTTTAAGGAGGAGGAGTAGCAGTTGGGGT
CAACAATAGTCTAAAGTTCTACAAATGGTAAATCATTCATCAGATATGTGTTTTAGAAAA
ATAGGTTTATTTTGTCCTGAAAGTGGTATGGAGATTTTGAGGTTCTTCACGTTAATGTTA
ACATATGCTTTGTATCATATAGAAGCATAAGAGCTAATAAACTTTGCAAAGGTCAATGGA
AACGAAGATTTCTGTTTAAATGGATTTTGAATTCCATTCATTAACTTACAATACATTGCC
CCACTGGCCAAGCGAAATTTCCCCACTCTTGAATTTATCAAACACATTTCTTTTTGGAAT
CAAGTCCAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-544, gnl|bosTau2|chr5 (11413635-11414168)
               


               
               557-912, gnl|bosTau2|chr5 (11414417-11414776)
               

               
               557-912, gnl|Mm7|chr10 (97073627-97073953)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-544, gnl|bosTau2|chr5 (11413635-11414168)
               


               
               557-912, gnl|bosTau2|chr5 (11414417-11414776)
               

               
               557-912, gnl|Mm7|chr10 (97073627-97073953)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sag (0.182715)
               

               
               liv (0.146284)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               ldo (0.0970026)

	6-544, gnl\|bosTau2\|chr5 (11413635-11414168)

	557-912, gnl\|bosTau2\|chr5 (11414417-11414776)
	557-912, gnl\|Mm7\|chr10 (97073627-97073953)