Non-Coding RNA Search

Ss1.1-rpliv0138_a2.5

Sequence:


               
               TCACTCAGCTGCTATCTGCAGAGATGGTGACACTCAGCCACCGCCTCATCTCTGCCTCTC
ATCCTGGAGATATTGCTGGCGTGCCACCATCACGCCTGAGTGCCAGGACAGTGGCAGGGA
CACCACAAACCCACTCTGTGCATGAACTTGACGTGGTACCTAACACAGAAACCATGGGGG
GGCGGGTTGTGACATCGAAGGTGGGTGTTTTTTGTTTGGCTTTGCACGAATGGTGCAGTT
TGGCAGAATCTTCCTGGTGTAGGACCCCCAAAGGTCTGGTAACGTTTCTTGTCGCTTGAT
TTCTTAGTGTGAATCTCCCCGACCTACCCCTAAGGGGTGGTTTCAGGTAAGATATAAAAA
ACTAAACATCTCCTGAATGATTCACATCTCAGACTGTTATAGAAAACACCCTTTGATCTG
CCTGTTGAAGTTAGTTCTGGGCACAGAGTTCAGTGGGCTGTGACTGCCTGGTTGAGGAAA
GTTATCTGCTAGTATTCTGGGTCCCTAGGACCAGTATTAATAAAAGGCTTGTTTTCCTCT
GGGAGGAGATGGGGGTCTCTACCTGGGAAAGAAAGGCCACTTCCTCTCATCCTCTGGCAT
CAAAACCCACTGATTTTCTTAAAGATGATTCTAAGTTTCTAGTCAGCTACCATAGCAGGC
TCCTTCACGGTGACCCCATCATGTAAAATCAGGCATCAGAGGCTGCAGATTTGCAGTTTC
TCTGGCCTGGCTGTTCATCATGGATGTGCTTTTAACATGAGCATCTGGGCCTCAAAGTGG
CTGCTTCTGGGTGATTTATGTGTTCATTGTTCACAGCTTTATTCTTAAACCAAACCCACC
CACGCTTAATTCACATAGTTTCTAAGTTTCCCAACTACTTGCACACCTTTTGAAAGATAA
AGTTTATTGTAACATTGATGTCTCAAAAGCTTATTAATAATGTCCCTTATCTTTTGACTG
TTTGGAAGCTCCTATGCCTTGCTGAGAGTGGCTGCTTTACGAGTAGTATTTGGTAGGTGA
ACAGGGCTCAGAACTTCTGAAACGTGTGATCGATCATCACCCATGATCCTGGCGTGTTGG
TGGCATAAATTGAGTTTTCATGTTCAGAACAGCCAGCACTAGGGATGAGTTACCTGAAAT
AGTGTTCACTGTGCTTGTTAAATGAGGAGTTTCACCCAGTCTCTCAATTCCAAGATGCTT
CTGGAAAAGCAGTGACAGATGATGACTAAATACAAAGTCTTTGACATTTGGTTTGTGTTT
TTTCTAGTACAGATTTTAAATTATGGCCAATTTCAAGTGTTCTTAAAGAGCAAAATAAGG
TTAAATATTTCAAGCCTTTGGAAAATCATGAAATGTGTATTGTCTTTGTATTTTTGATAA
AAATTCAAAATAAATTTCTAAATACCTTTTGATATAAAAAAAAAAAAATATCTTTTTTCA
TTCTCTTAAATTTTTATTGTAAAAGAACTCAACCATAGAATTTAAGAAGCCAGTTCTAAA
TTGTTTTTAGTGGTTAAAATAGGTTTCAACTTTGCCTCCTGTTCTGAAGCAGTGGACGGC
AAGAGTGTCCACTCTGCGCCAACAGCCCAAGTGCCTCTGCTCACTTGTTGCAGGATTAGA
AGCTGGTGAGTGATAACTTCTAAAACTTGAGATTTCATTCCATTTCCATAATGCTTCCTA
GGAGCTGACATCTGCCTGAATAACAGGTTACTTCTACAGAGACAGGGCTGTGCTCTTGAC
TCAATTCCCAGAAAACAAGTTGCTCAATGCCAGACCCAGTGGTTTCCATGGCAGCCTCAG
TTTGTTTCTCAACAAGAACTTCCCTGCCAGTTCTTACTACATGAGTCACACCCCAAGTGT
TTTGTTGCCCTTGGATATAAAACCGACTCAAATTTTTAGAAAGAAAAAAATTTCCATGTG
TGTAATGTTAAGTTCCCAGCCAGTTCACAGCCTAACCTACGTACAAATCACTGTCATCCA
GGTGTTCTTAGTTTATGTAAAATCTAAGAAAATGTAGAGCCAGGTCTTCTTATGTAAGTG
CTTTATTTTTTTTCTCAAAATATTGTAAAAGTTATTTCTCCTAAATAACTACTTTGCATA
GAGCTTTATAAATGTTTCCAGTAATGAATAAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTCAGCTGCTATCTGCAGAGATGGTGACACTCAGCCACCGCCTCATCTCTGCCTCTC
ATCCTGGAGATATTGCTGGCGTGCCACCATCACGCCTGAGTGCCAGGACAGTGGCAGGGA
CACCACAAACCCACTCTGTGCATGAACTTGACGTGGTACCTAACACAGAAACCATGGGGG
GGCGGGTTGTGACATCGAAGGTGGGTGTTTTTTGTTTGGCTTTGCACGAATGGTGCAGTT
TGGCAGAATCTTCCTGGTGTAGGACCCCCAAAGGTCTGGTAACGTTTCTTGTCGCTTGAT
TTCTTAGTGTGAATCTCCCCGACCTACCCCTAAGGGGTGGTTTCAGGTAAGATATAAAAA
ACTAAACATCTCCTGAATGATTCACATCTCAGACTGTTATAGAAAACACCCTTTGATCTG
CCTGTTGAAGTTAGTTCTGGGCACAGAGTTCAGTGGGCTGTGACTGCCTGGTTGAGGAAA
GTTATCTGCTAGTATTCTGGGTCCCTAGGACCAGTATTAATAAAAGGCTTGTTTTCCTCT
GGGAGGAGATGGGGGTCTCTACCTGGGAAAGAAAGGCCACTTCCTCTCATCCTCTGGCAT
CAAAACCCACTGATTTTCTTAAAGATGATTCTAAGTTTCTAGTCAGCTACCATAGCAGGC
TCCTTCACGGTGACCCCATCATGTAAAATCAGGCATCAGAGGCTGCAGATTTGCAGTTTC
TCTGGCCTGGCTGTTCATCATGGATGTGCTTTTAACATGAGCATCTGGGCCTCAAAGTGG
CTGCTTCTGGGTGATTTATGTGTTCATTGTTCACAGCTTTATTCTTAAACCAAACCCACC
CACGCTTAATTCACATAGTTTCTAAGTTTCCCAACTACTTGCACACCTTTTGAAAGATAA
AGTTTATTGTAACATTGATGTCTCAAAAGCTTATTAATAATGTCCCTTATCTTTTGACTG
TTTGGAAGCTCCTATGCCTTGCTGAGAGTGGCTGCTTTACGAGTAGTATTTGGTAGGTGA
ACAGGGCTCAGAACTTCTGAAACGTGTGATCGATCATCACCCATGATCCTGGCGTGTTGG
TGGCATAAATTGAGTTTTCATGTTCAGAACAGCCAGCACTAGGGATGAGTTACCTGAAAT
AGTGTTCACTGTGCTTGTTAAATGAGGAGTTTCACCCAGTCTCTCAATTCCAAGATGCTT
CTGGAAAAGCAGTGACAGATGATGACTAAATACAAAGTCTTTGACATTTGGTTTGTGTTT
TTTCTAGTACAGATTTTAAATTATGGCCAATTTCAAGTGTTCTTAAAGAGCAAAATAAGG
TTAAATATTTCAAGCCTTTGGAAAATCATGAAATGTGTATTGTCTTTGTATTTTTGATAA
AAATTCAAAATAAATTTCTAAATACCTTTTGATATAAAAAAAAAAAAATATCTTTTTTCA
TTCTCTTAAATTTTTATTGTAAAAGAACTCAACCATAGAATTTAAGAAGCCAGTTCTAAA
TTGTTTTTAGTGGTTAAAATAGGTTTCAACTTTGCCTCCTGTTCTGAAGCAGTGGACGGC
AAGAGTGTCCACTCTGCGCCAACAGCCCAAGTGCCTCTGCTCACTTGTTGCAGGATTAGA
AGCTGGTGAGTGATAACTTCTAAAACTTGAGATTTCATTCCATTTCCATAATGCTTCCTA
GGAGCTGACATCTGCCTGAATAACAGGTTACTTCTACAGAGACAGGGCTGTGCTCTTGAC
TCAATTCCCAGAAAACAAGTTGCTCAATGCCAGACCCAGTGGTTTCCATGGCAGCCTCAG
TTTGTTTCTCAACAAGAACTTCCCTGCCAGTTCTTACTACATGAGTCACACCCCAAGTGT
TTTGTTGCCCTTGGATATAAAACCGACTCAAATTTTTAGAAAGAAAAAAATTTCCATGTG
TGTAATGTTAAGTTCCCAGCCAGTTCACAGCCTAACCTACGTACAAATCACTGTCATCCA
GGTGTTCTTAGTTTATGTAAAATCTAAGAAAATGTAGAGCCAGGTCTTCTTATGTAAGTG
CTTTATTTTTTTTCTCAAAATATTGTAAAAGTTATTTCTCCTAAATAACTACTTTGCATA
GAGCTTTATAAATGTTTCCAGTAATGAATAAAATCT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               510-1008, gnl|bosTau2|chr22 (45909121-45909603)
               

               
               510-1008, gnl|Hg17|chr3 (14159234-14159805)
               

               
               510-1008, gnl|Mm7|chr6 (91570075-91570616)
               


               
               1046-1484, gnl|bosTau2|chr22 (45909597-45910058)
               

               
               1046-1484, gnl|Hg17|chr3 (14159751-14160283)
               

               
               1046-1484, gnl|Mm7|chr6 (91570608-91571008)
               


               
               1946-2136, gnl|bosTau2|chr22 (45911237-45911424)
               

               
               1946-2136, gnl|Mm7|chr6 (91571749-91571932)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               510-1008, gnl|bosTau2|chr22 (45909121-45909603)
               

               
               510-1008, gnl|Hg17|chr3 (14159234-14159805)
               

               
               510-1008, gnl|Mm7|chr6 (91570075-91570616)
               


               
               1046-1484, gnl|bosTau2|chr22 (45909597-45910058)
               

               
               1046-1484, gnl|Hg17|chr3 (14159751-14160283)
               

               
               1046-1484, gnl|Mm7|chr6 (91570608-91571008)
               


               
               1946-2136, gnl|bosTau2|chr22 (45911237-45911424)
               

               
               1946-2136, gnl|Mm7|chr6 (91571749-91571932)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

Help | Less info


               
               gul (1.24312)
               

               
               aor (1.17165)
               

               
               liv (1.02399)
               

               
               mgp (0.922722)
               

               
               ski (0.880411)
               

               
               fat (0.737137)
               

               
               csk (0.70373)
               

               
               hea (0.613497)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.24312)
               

               
               aor (1.17165)
               

               
               liv (1.02399)
               

               
               mgp (0.922722)
               

               
               ski (0.880411)
               

               
               fat (0.737137)
               

               
               csk (0.70373)
               

               
               hea (0.613497)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	510-1008, gnl\|bosTau2\|chr22 (45909121-45909603)
	510-1008, gnl\|Hg17\|chr3 (14159234-14159805)
	510-1008, gnl\|Mm7\|chr6 (91570075-91570616)

	1046-1484, gnl\|bosTau2\|chr22 (45909597-45910058)
	1046-1484, gnl\|Hg17\|chr3 (14159751-14160283)
	1046-1484, gnl\|Mm7\|chr6 (91570608-91571008)

	1946-2136, gnl\|bosTau2\|chr22 (45911237-45911424)
	1946-2136, gnl\|Mm7\|chr6 (91571749-91571932)

	gul (1.24312)
	aor (1.17165)
	liv (1.02399)
	mgp (0.922722)
	ski (0.880411)
	fat (0.737137)
	csk (0.70373)
	hea (0.613497)
	fce (0.543183)
	pro (0.512033)
	bla (0.497389)
	ret (0.3862)
	elu (0.385356)
	tra (0.369276)
	fbs (0.350693)
	eye (0.341006)
	spc (0.340097)
	fco (0.314416)
	bfe (0.299715)
	lin (0.291206)
	ova (0.258264)
	sug (0.254582)
	thg (0.253582)
	cbe (0.239234)
	ecc (0.23007)
	tes (0.207814)
	nlu (0.191681)
	sto (0.179824)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	spl (0.143184)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)
	cbl (0.114797)