Non-Coding RNA Search

Ss1.1-rpliv0138_j7.5

Sequence:


               
               AAAAGTCTTCTGAGAAAGAAAAGCTAGCCAAAGAAAAACAAGCACCTCGCTTTGAGCCTC
AGATGTCCATTGCGTCACTCTCAAGAAGACCCAAAGGAGCCCTTCTGGAGTTTGAGGTGG
GTCACTGAGACACAATGAGAGCGGAGGTTTTTGAAGTGAAAAAAGAGAGCGAGCGAGCAG
ATGAAATCCGAGCCATGAAGCAAGCCTGGGAGATGACGGAGCCANGAAGATCGATCAAGG
GTTCCCAGGCGCGGCTCCATTATCTCAGCCGGGTCATTAAGAAAACGCCTGACACCGAGG
GTGTGCTTATGTCTGAGAGCCAAACCAAAGCAGGGGAAGAAGGGCCTCGTTCACGATCGC
CAACAATTTTGGAAATGTCTCCACAACTTATTCGGAAAAAACTACAATGTGTAGACTTAA
GTCAATATATACAGAAAACAGATACTGATATTCTGCTGCAAACGGATGAACTGAATCAGC
AGCAGGCAATGCAAAAGGCAGAGGAGGTTCATCAGTTTCGACAATATAGGTCCAGAATCC
TCAGCATTCGAGACATTGACCAAGAAGAAAGGTTGAAAATAAAGGATAAAGTTTTGGAGA
TGTACGGGGAAATGCAGGACTCCTTAGATGAAGCCCGGCAAAAGATCTTCAATATCCGGG
AGGAGTACAGAAACAAGTTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTCTTCTGAGAAAGAAAAGCTAGCCAAAGAAAAACAAGCACCTCGCTTTGAGCCTC
AGATGTCCATTGCGTCACTCTCAAGAAGACCCAAAGGAGCCCTTCTGGAGTTTGAGGTGG
GTCACTGAGACACAATGAGAGCGGAGGTTTTTGAAGTGAAAAAAGAGAGCGAGCGAGCAG
ATGAAATCCGAGCCATGAAGCAAGCCTGGGAGATGACGGAGCCANGAAGATCGATCAAGG
GTTCCCAGGCGCGGCTCCATTATCTCAGCCGGGTCATTAAGAAAACGCCTGACACCGAGG
GTGTGCTTATGTCTGAGAGCCAAACCAAAGCAGGGGAAGAAGGGCCTCGTTCACGATCGC
CAACAATTTTGGAAATGTCTCCACAACTTATTCGGAAAAAACTACAATGTGTAGACTTAA
GTCAATATATACAGAAAACAGATACTGATATTCTGCTGCAAACGGATGAACTGAATCAGC
AGCAGGCAATGCAAAAGGCAGAGGAGGTTCATCAGTTTCGACAATATAGGTCCAGAATCC
TCAGCATTCGAGACATTGACCAAGAAGAAAGGTTGAAAATAAAGGATAAAGTTTTGGAGA
TGTACGGGGAAATGCAGGACTCCTTAGATGAAGCCCGGCAAAAGATCTTCAATATCCGGG
AGGAGTACAGAAACAAGTTGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61825497|ref|XP_584621.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825497|ref|XP_584621.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               426-543, - strand, RNAz p=0.930202

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-543, - strand, RNAz p=0.930202

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               426-615, gnl|bosTau2|chr9 (49322768-49322958)
               

               
               426-615, gnl|Hg17|chr6 (147164648-147164838)
               

               
               426-615, gnl|Mm7|chr10 (10039430-10039240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-615, gnl|bosTau2|chr9 (49322768-49322958)
               

               
               426-615, gnl|Hg17|chr6 (147164648-147164838)
               

               
               426-615, gnl|Mm7|chr10 (10039430-10039240)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)

	426-615, gnl\|bosTau2\|chr9 (49322768-49322958)
	426-615, gnl\|Hg17\|chr6 (147164648-147164838)
	426-615, gnl\|Mm7\|chr10 (10039430-10039240)