Non-Coding RNA Search

Ss1.1-rpliv0139_b2.5

Sequence:


               
               AAGGCATAGAACACACTTTGAAGAGTGCCTGGCAAATAGAAGGTGCTCAGTTTTTGTGTG
ATGTTTGACATGTTTCATTTATAATCTTCTTTATACCTTAAAGGGACCTAAGGCAGCTTA
TGACTGAAAACCTTGGTAGGAGCTGGTCTTTCCTAAATGGTAGGAATTTCACAAGTGATA
TGGAAAGATTGCCAACAGATTTGCATTGCATTTACCTTGATCCAACAGGTTGAAAGAAAA
TCCATTTTTTCCCCCACTTATCCTTAGCTCTCTAGGCATATACCTAAGGATATAGAGAAT
GATAGCTATCATTTGTCTTGAATCTTCCAGATTTGAAAGGATGTGTAGATTCAGCTTTGT
CAGGGAGTCCCAGCACTACTAAATTAAGAAGGTATTAAAGATTAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCATAGAACACACTTTGAAGAGTGCCTGGCAAATAGAAGGTGCTCAGTTTTTGTGTG
ATGTTTGACATGTTTCATTTATAATCTTCTTTATACCTTAAAGGGACCTAAGGCAGCTTA
TGACTGAAAACCTTGGTAGGAGCTGGTCTTTCCTAAATGGTAGGAATTTCACAAGTGATA
TGGAAAGATTGCCAACAGATTTGCATTGCATTTACCTTGATCCAACAGGTTGAAAGAAAA
TCCATTTTTTCCCCCACTTATCCTTAGCTCTCTAGGCATATACCTAAGGATATAGAGAAT
GATAGCTATCATTTGTCTTGAATCTTCCAGATTTGAAAGGATGTGTAGATTCAGCTTTGT
CAGGGAGTCCCAGCACTACTAAATTAAGAAGGTATTAAAGATTAATTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-141, gnl|bosTau2|chr23 (24232003-24232143)
               


               
               158-408, gnl|bosTau2|chr23 (24232136-24232385)
               

               
               158-408, gnl|Hg17|chr6 (26225437-26225156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr23 (24232003-24232143)
               


               
               158-408, gnl|bosTau2|chr23 (24232136-24232385)
               

               
               158-408, gnl|Hg17|chr6 (26225437-26225156)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.292569)
               

               
               duo (0.172801)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               duo (0.172801)

	1-141, gnl\|bosTau2\|chr23 (24232003-24232143)

	158-408, gnl\|bosTau2\|chr23 (24232136-24232385)
	158-408, gnl\|Hg17\|chr6 (26225437-26225156)