Non-Coding RNA Search

Ss1.1-rpliv0139_b5.5

Sequence:


               
               AAACAGATAAACAAGAAGTGCTGTTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTG
CACCGTGCGTCACATCTGTCACACCAAGAGGATTGGGCCAAGATGAGGAAGATACCTCTT
TTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTACAGACAGTGACTCTGCTTTCT
TACACAGCACTCCAGAAAGACCCACTGTCCTTGGTCCTGCCACATCTGAGGCTGTATGCC
AGGATAAATTTAATATGGAGCCCAGAGACAACCCGGGAAACTTTGTTAAAACAGAAATTG
AGGGGATTGACTCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAAC
CCTCAAATCATGTAAATACTTGTATCAGGACAGCTCCGGATAGAGCTTTGTGTTTGTCAC
CTGGAGACCATAATGCATTATATGTAAATACATTCCCACTTCAGGACCGGTCTGATGCAC
CTTTTCCTTCACTCAATTCCCCAGGAGAAGCTATCCGAGGACCAGAGCAGCCCGTTTGGA
AGCCCTTTCCTAATCAAGACAGTGACTTATCGGTACTAAGTGGCACAGGCTCAGAACTGC
ATATACCTCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGG
GGGATTTCCTCCGGCATCTTAATTCACACTTTATTGTGGAGACTTAAGACGCATTGGAAA
ACAGACATATCAAGTTCTGTGTGGTAATTTGGGGTCTGTAATACTATATACTTGATTGCA
AACTTAGCTCAAGATCATTTATTGAAAAATCCAGTGTCACAGTATTTGGCTTTTTTCATA
AACTTATAGTGTAACTTTCTTATCACCTTTTAAAAGATCATTCTGTACAAAAACTGTAGT
TCGTTGTCTTCATGTTTACAGTGTTTATTACCATAATTCCAAATTATATGTGACTTACAG
AATTGCATAATAATTTATGTCTTTTTCAAATATCTAAGCTCATTGCTTGGATTTCTGGCT
AGATCTATTGAATTTGGTGATGTCAAATGTTTATGGGTTTTCATTTGTTTTCATTTTAAA
ATTTAGATTATTTATGCTATAGGTGTCCTTTTTGAATAAACCCATGATTGTAGGGAAGAT
AAACATCTGAGTAAATATCAAACCCAAGACATTTGTTGCTCAGTGATAAAAGCACCGGTA
GGATTATTTAAACACTTGAGTGCCTGGTTTTTTTTTAATAATAGACATTGTTTTAATTTT
TACTATTTGTATAGCTACATGATGAAATTAGTTAAATATTTAAAAAGTTACTTATGTTGT
GATCATTAATGTGTTCTTTGTTCTTGGATAAAATAAATCACATTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAGATAAACAAGAAGTGCTGTTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTG
CACCGTGCGTCACATCTGTCACACCAAGAGGATTGGGCCAAGATGAGGAAGATACCTCTT
TTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTACAGACAGTGACTCTGCTTTCT
TACACAGCACTCCAGAAAGACCCACTGTCCTTGGTCCTGCCACATCTGAGGCTGTATGCC
AGGATAAATTTAATATGGAGCCCAGAGACAACCCGGGAAACTTTGTTAAAACAGAAATTG
AGGGGATTGACTCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAAC
CCTCAAATCATGTAAATACTTGTATCAGGACAGCTCCGGATAGAGCTTTGTGTTTGTCAC
CTGGAGACCATAATGCATTATATGTAAATACATTCCCACTTCAGGACCGGTCTGATGCAC
CTTTTCCTTCACTCAATTCCCCAGGAGAAGCTATCCGAGGACCAGAGCAGCCCGTTTGGA
AGCCCTTTCCTAATCAAGACAGTGACTTATCGGTACTAAGTGGCACAGGCTCAGAACTGC
ATATACCTCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGG
GGGATTTCCTCCGGCATCTTAATTCACACTTTATTGTGGAGACTTAAGACGCATTGGAAA
ACAGACATATCAAGTTCTGTGTGGTAATTTGGGGTCTGTAATACTATATACTTGATTGCA
AACTTAGCTCAAGATCATTTATTGAAAAATCCAGTGTCACAGTATTTGGCTTTTTTCATA
AACTTATAGTGTAACTTTCTTATCACCTTTTAAAAGATCATTCTGTACAAAAACTGTAGT
TCGTTGTCTTCATGTTTACAGTGTTTATTACCATAATTCCAAATTATATGTGACTTACAG
AATTGCATAATAATTTATGTCTTTTTCAAATATCTAAGCTCATTGCTTGGATTTCTGGCT
AGATCTATTGAATTTGGTGATGTCAAATGTTTATGGGTTTTCATTTGTTTTCATTTTAAA
ATTTAGATTATTTATGCTATAGGTGTCCTTTTTGAATAAACCCATGATTGTAGGGAAGAT
AAACATCTGAGTAAATATCAAACCCAAGACATTTGTTGCTCAGTGATAAAAGCACCGGTA
GGATTATTTAAACACTTGAGTGCCTGGTTTTTTTTTAATAATAGACATTGTTTTAATTTT
TACTATTTGTATAGCTACATGATGAAATTAGTTAAATATTTAAAAAGTTACTTATGTTGT
GATCATTAATGTGTTCTTTGTTCTTGGATAAAATAAATCACATTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874722|ref|XP_587821.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874722|ref|XP_587821.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               527-1365, gnl|bosTau2|chr2 (19940316-19939485)
               

               
               527-1365, gnl|Hg17|chr2 (161917356-161918269)
               

               
               527-1365, gnl|Mm7|chr2 (61583924-61584703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               527-1365, gnl|bosTau2|chr2 (19940316-19939485)
               

               
               527-1365, gnl|Hg17|chr2 (161917356-161918269)
               

               
               527-1365, gnl|Mm7|chr2 (61583924-61584703)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               liv (0.585137)
               

               
               amn (0.417711)
               

               
               lin (0.291206)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               fat (0.147427)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               amn (0.417711)
               

               
               lin (0.291206)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               fat (0.147427)

	527-1365, gnl\|bosTau2\|chr2 (19940316-19939485)
	527-1365, gnl\|Hg17\|chr2 (161917356-161918269)
	527-1365, gnl\|Mm7\|chr2 (61583924-61584703)

	liv (0.585137)
	amn (0.417711)
	lin (0.291206)
	ese (0.253004)
	mgp (0.230681)
	ece (0.229305)
	gul (0.177588)
	csp (0.161186)
	fco (0.157208)
	fat (0.147427)