Non-Coding RNA Search

Ss1.1-rpliv0139_f19.5

Sequence:


               
               TTTTGTTGTTGTTGTTTTTTTTTAGTTCTTCTATACTTGCCCCAAATTGTAGTCTTTGAG
GTCATGTGCATTGCACGTTGGATGAGCCAGGGGAATTATTACAGTAACATTTAAGCATTT
TATGTGTATGTAGCTGTTGCTTTATACTGAGAAAATGGAGACTTTGGGGAGTGATTAGCT
CTATGATTTTATTTGGGGGAAGCAGGGAAAGGTGCACTTGATCTCTAGCAAAAACTGAGC
ATAATTTTTCGTCATTTACTCTTGTGATACAACTTCCCATTTCAGAATATTTAGACATAC
TGTATCTTTTGTTCAGTGCAGATTTTTCCCCAGATAATATGGTTCTTTGATGCCTTTTAC
ATATTGGACATATAGCTTATGCGTTTTAGGTTTTTGTTGCTATCTTGCCAAAATAAGTGT
CAGTTATGTCTTGATTTCTGCCCCCTCTCCCTCAAATGTCTTATTTTTAAAAAAAAAACT
AAAAGCATACTTCAAAGTCAGAGCCCTTATTTTGGTATAAGACTTGGGTTTTGTTTATTT
CACATTGAACATAGTGTTACCCAAGAAGTCTGTGATGATGGCAAGTGAAAGTAAAAGCAG
CTGACGGGCCTGATTCAGCCAGTCCTGGGCTGGCTTTCTATTTGGGCATAATTCTTGTGT
GTTCCTTGTCCAGTTTGCTGATCTAAACTCAGTTGGTATCGAGGTTTCTGACTACATCTG
AGAAATCATCTTCAAGGTAAAAATATAAAAGGTATGCTGAAAATCAAAAATACATGGAGT
GAAGAATTTTGTTTGGAGCACTGGCTTATGTCTTTCACCTCTTTGTGATTCATCTCACAG
ACTACAGTGAAACTCTTAACAATGTAAGTTTTTTTCACATTGAAATTTACAAACAACTGG
TATGATAAAACTTTATTAGCTTGGTATTTTAAGCAAACCCTCGCAATCTTAATGGAAAGG
AACAAACTCGTCTCCGGCTGTCCCCCCATCCCCATAAATTTGGATGAGATTGCAGGAGAG
CCATATACTTAGAGGGAATGTGCTTTGTCACACCAAAGAGGTTTTTACAAATCCACATCT
CACCTAGGTTAAGTTTTTTTTGCCATTGTCTGAAATTCTGTAGGGGACACCGGTTGATCT
AAGCCTGTTATATTCAGCATACCCATGTCAAGCTGATGAGGTCCTGTTATGGAGGGGTTC
CCCCCCCCTTTTTTTTCTTTTATTTGAAGGAAAACATGTTCAGGGCTTCTAAACACTAAA
GAGAAAACTTTGGCTTAGACCAGTGTTTTGTCTAGTGCCAAAAATGGAATTCAAATCCAC
ATAGTGAGAAATCGATTCATAGTGGCTATCCTAATAGAGTAATCCTTCACTTTGCTCTAT
TCAACTGTCTTAAAATTTCCTGTTTCAAACAGCTATGTTACTTGATTAAAACAATGTTAA
AATTATTTTTTGTCTCTGCTTTAATATTAAAATTAACCTAAATTTTTGGAGCATTGAAAC
CTGCCCTATTTTGTAGCTACTGTTTCAAATTTGTGTTTGGTACTTCCTTGTGCAATTGCC
CTCCTACCCACAAAACTGATGTTGCTCATTATAGTGGCTTTAGATCTCGTGTTCCTGTTC
TGTAACTCAAGTTGATAACAAGCTGAAGAGGTCTGCCTTCATCCGATAGCTTCAAAGATA
CTGCTGGGTGTGCTTAAGAGGGTGCTTACAAGGTGTCACGTAGACTTTCGAATAACTATT
TCTCTTTATAAGGAATGTTTCTAACCAAGTTCCCTTTGAAGTTAATGAATTTAAAGCATA
CTATTTGGGGTTCTAAAGGTTTGAGTGTTTCCCACTTGGGAGTTAGGGTTGCTTTCCATT
GTTTACACTGCTGCACCAAGCCCTGACCTAAATAAAACCTTTGACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTGTTGTTGTTTTTTTTTAGTTCTTCTATACTTGCCCCAAATTGTAGTCTTTGAG
GTCATGTGCATTGCACGTTGGATGAGCCAGGGGAATTATTACAGTAACATTTAAGCATTT
TATGTGTATGTAGCTGTTGCTTTATACTGAGAAAATGGAGACTTTGGGGAGTGATTAGCT
CTATGATTTTATTTGGGGGAAGCAGGGAAAGGTGCACTTGATCTCTAGCAAAAACTGAGC
ATAATTTTTCGTCATTTACTCTTGTGATACAACTTCCCATTTCAGAATATTTAGACATAC
TGTATCTTTTGTTCAGTGCAGATTTTTCCCCAGATAATATGGTTCTTTGATGCCTTTTAC
ATATTGGACATATAGCTTATGCGTTTTAGGTTTTTGTTGCTATCTTGCCAAAATAAGTGT
CAGTTATGTCTTGATTTCTGCCCCCTCTCCCTCAAATGTCTTATTTTTAAAAAAAAAACT
AAAAGCATACTTCAAAGTCAGAGCCCTTATTTTGGTATAAGACTTGGGTTTTGTTTATTT
CACATTGAACATAGTGTTACCCAAGAAGTCTGTGATGATGGCAAGTGAAAGTAAAAGCAG
CTGACGGGCCTGATTCAGCCAGTCCTGGGCTGGCTTTCTATTTGGGCATAATTCTTGTGT
GTTCCTTGTCCAGTTTGCTGATCTAAACTCAGTTGGTATCGAGGTTTCTGACTACATCTG
AGAAATCATCTTCAAGGTAAAAATATAAAAGGTATGCTGAAAATCAAAAATACATGGAGT
GAAGAATTTTGTTTGGAGCACTGGCTTATGTCTTTCACCTCTTTGTGATTCATCTCACAG
ACTACAGTGAAACTCTTAACAATGTAAGTTTTTTTCACATTGAAATTTACAAACAACTGG
TATGATAAAACTTTATTAGCTTGGTATTTTAAGCAAACCCTCGCAATCTTAATGGAAAGG
AACAAACTCGTCTCCGGCTGTCCCCCCATCCCCATAAATTTGGATGAGATTGCAGGAGAG
CCATATACTTAGAGGGAATGTGCTTTGTCACACCAAAGAGGTTTTTACAAATCCACATCT
CACCTAGGTTAAGTTTTTTTTGCCATTGTCTGAAATTCTGTAGGGGACACCGGTTGATCT
AAGCCTGTTATATTCAGCATACCCATGTCAAGCTGATGAGGTCCTGTTATGGAGGGGTTC
CCCCCCCCTTTTTTTTCTTTTATTTGAAGGAAAACATGTTCAGGGCTTCTAAACACTAAA
GAGAAAACTTTGGCTTAGACCAGTGTTTTGTCTAGTGCCAAAAATGGAATTCAAATCCAC
ATAGTGAGAAATCGATTCATAGTGGCTATCCTAATAGAGTAATCCTTCACTTTGCTCTAT
TCAACTGTCTTAAAATTTCCTGTTTCAAACAGCTATGTTACTTGATTAAAACAATGTTAA
AATTATTTTTTGTCTCTGCTTTAATATTAAAATTAACCTAAATTTTTGGAGCATTGAAAC
CTGCCCTATTTTGTAGCTACTGTTTCAAATTTGTGTTTGGTACTTCCTTGTGCAATTGCC
CTCCTACCCACAAAACTGATGTTGCTCATTATAGTGGCTTTAGATCTCGTGTTCCTGTTC
TGTAACTCAAGTTGATAACAAGCTGAAGAGGTCTGCCTTCATCCGATAGCTTCAAAGATA
CTGCTGGGTGTGCTTAAGAGGGTGCTTACAAGGTGTCACGTAGACTTTCGAATAACTATT
TCTCTTTATAAGGAATGTTTCTAACCAAGTTCCCTTTGAAGTTAATGAATTTAAAGCATA
CTATTTGGGGTTCTAAAGGTTTGAGTGTTTCCCACTTGGGAGTTAGGGTTGCTTTCCATT
GTTTACACTGCTGCACCAAGCCCTGACCTAAATAAAACCTTTGACCTG

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               3-220, gnl|bosTau2|chr13 (54342368-54342602)
               

               
               3-220, gnl|Hg17|chr14 (102877796-102877995)
               

               
               3-220, gnl|Mm7|chr12 (109061426-109061619)
               


               
               232-536, gnl|bosTau2|chr13 (54343734-54344031)
               

               
               232-536, gnl|Hg17|chr14 (102878003-102878326)
               

               
               232-536, gnl|Mm7|chr12 (109061647-109061935)
               


               
               1055-1444, gnl|bosTau2|chr1 (4191102-4191492)
               

               
               1055-1444, gnl|Hg17|chr20 (32253151-32253544)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-220, gnl|bosTau2|chr13 (54342368-54342602)
               

               
               3-220, gnl|Hg17|chr14 (102877796-102877995)
               

               
               3-220, gnl|Mm7|chr12 (109061426-109061619)
               


               
               232-536, gnl|bosTau2|chr13 (54343734-54344031)
               

               
               232-536, gnl|Hg17|chr14 (102878003-102878326)
               

               
               232-536, gnl|Mm7|chr12 (109061647-109061935)
               


               
               1055-1444, gnl|bosTau2|chr1 (4191102-4191492)
               

               
               1055-1444, gnl|Hg17|chr20 (32253151-32253544)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

Help | Less info


               
               tbr (0.925069)
               

               
               tes (0.831255)
               

               
               bla (0.746083)
               

               
               pan (0.471921)
               

               
               spc (0.453463)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.925069)
               

               
               tes (0.831255)
               

               
               bla (0.746083)
               

               
               pan (0.471921)
               

               
               spc (0.453463)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	3-220, gnl\|bosTau2\|chr13 (54342368-54342602)
	3-220, gnl\|Hg17\|chr14 (102877796-102877995)
	3-220, gnl\|Mm7\|chr12 (109061426-109061619)

	232-536, gnl\|bosTau2\|chr13 (54343734-54344031)
	232-536, gnl\|Hg17\|chr14 (102878003-102878326)
	232-536, gnl\|Mm7\|chr12 (109061647-109061935)

	1055-1444, gnl\|bosTau2\|chr1 (4191102-4191492)
	1055-1444, gnl\|Hg17\|chr20 (32253151-32253544)

	tbr (0.925069)
	tes (0.831255)
	bla (0.746083)
	pan (0.471921)
	spc (0.453463)
	ste (0.405625)
	aor (0.390549)
	kid (0.389206)
	sug (0.381874)
	sag (0.36543)
	fbs (0.350693)
	nje (0.33184)
	sme (0.305437)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	hyp (0.285673)
	ssp (0.271039)
	pla (0.267344)
	thg (0.253582)
	tra (0.246184)
	jca (0.22792)
	mas (0.210305)
	eje (0.197668)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	sin (0.174948)
	mga (0.160205)
	fco (0.157208)
	ctl (0.153069)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	hlv (0.139256)
	ova (0.129132)
	ret (0.128733)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)