Non-Coding RNA Search

Ss1.1-rpliv0140_g24.5

Sequence:


               
               GCGAGTAACTAAAAAAGAACTCTTTAAGATAGCTAAACAAGAATTTCAGACAAGTTTGTC
TTTGAAAGAAGAGCTAGAACGATTACTGATGGTGGAAAAGGAGGAGGATCTGAAATGTAC
AAAACAAGATGTTTCAGTGTCTCGGTCCCTTCCTCAGGAAACCAGAGTGTCTCCAAGTGA
CATCTTTCATCCTTTTAGAAAAGCTGTGCTTCCCACACTTCCTCCCTGCCCAGCTTTGGA
GAAGACAGATTCCTGGATAAATCCAGATTCTCTCAATCTGCCTTAGAGTTCTGCAGTTTG
TTCTTAAGGCCAATAAAGTTGGCTTATTTCCTCTGCCATCAGGGCCTTCCTCAGTGCTTA
GGTTTCTCATGTTGTAAATTTGGTTTTGTCTCAGTCACAGTCTTCAGGGAAAATTATATT
CTCTTGCTTGCTCCTCTGTTCCTGGAATTTGATTAGGAATGGAATAAATCGTTAATTAAT
GGAAGAACTGAATTTACTGATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGTAACTAAAAAAGAACTCTTTAAGATAGCTAAACAAGAATTTCAGACAAGTTTGTC
TTTGAAAGAAGAGCTAGAACGATTACTGATGGTGGAAAAGGAGGAGGATCTGAAATGTAC
AAAACAAGATGTTTCAGTGTCTCGGTCCCTTCCTCAGGAAACCAGAGTGTCTCCAAGTGA
CATCTTTCATCCTTTTAGAAAAGCTGTGCTTCCCACACTTCCTCCCTGCCCAGCTTTGGA
GAAGACAGATTCCTGGATAAATCCAGATTCTCTCAATCTGCCTTAGAGTTCTGCAGTTTG
TTCTTAAGGCCAATAAAGTTGGCTTATTTCCTCTGCCATCAGGGCCTTCCTCAGTGCTTA
GGTTTCTCATGTTGTAAATTTGGTTTTGTCTCAGTCACAGTCTTCAGGGAAAATTATATT
CTCTTGCTTGCTCCTCTGTTCCTGGAATTTGATTAGGAATGGAATAAATCGTTAATTAAT
GGAAGAACTGAATTTACTGATTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-362, - strand, RNAz p=0.901636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-362, - strand, RNAz p=0.901636

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-504, gnl|bosTau2|chr10 (25954971-25954473)
               

               
               3-504, gnl|Hg17|chr15 (39263698-39263211)
               

               
               3-504, gnl|Mm7|chr2 (119261192-119260723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-504, gnl|bosTau2|chr10 (25954971-25954473)
               

               
               3-504, gnl|Hg17|chr15 (39263698-39263211)
               

               
               3-504, gnl|Mm7|chr2 (119261192-119260723)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               tra (0.123092)

	3-504, gnl\|bosTau2\|chr10 (25954971-25954473)
	3-504, gnl\|Hg17\|chr15 (39263698-39263211)
	3-504, gnl\|Mm7\|chr2 (119261192-119260723)