Ss1.1-rplun0102_a14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAACAGCTGACAGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCGTCAGTGGTTATC AAAGACAGTTGAATTATAAGCACAGTGATGGTTCATACAGCACCTTTGGGGAACGTGGTG GTGGAAGCCAGGGAAACACTTGGCTGACTGCCTTTGTGCTCAAGTCCTTCTCTCAAGCCC GGGCATACATCTTTGTGGAGGACTCGCACATCCAAGATTCCCGTAACTGGCTCTCCCAGA AGCAAAAGGAAAACGGTTGTTTCCAGCGCTCTGGATCATTGTTCAACAATGCTATTAAGG GCGGGGTAGACGATGAGGTGACACTCTCTGCCTACATCACCATTGCGCTGCTGGAGATGC CACTGCCTGTCACTCACCCAGTTGTCCATAACGCTCTGCTCTGCCTGGAAAAGGCCTGGG AATCCATCTCAGAGGCCCCAGGAAATCTGGTCTATACCAAGGCATTACTGGCCTATGCCT TCACCCTAGCAGGAAACCAGGCCAAGCGAAAGGAGCTGCTTGAATCACTGGACAAAGAGG CTATAAAAACAGAGGACTCAATACACTGGCAACGTCCTGAGAAGTCTCAAGAAAGTGAAT TCGGTTACCAACCCCGGGCTCCTTCTGTTGATGTGGAGATGACCTCTTACTTGCTCCTTG CCCGTGTTACTGCCCAGCCTGCCCCATCTTCAGAAGACCTGTCCATGGCTTCACGTATGG TGAAATGGATCACCAAGCAACAAAACCCCAACGGGGGCTTCTCTTCCACTCAGGATACAG TGGTCGCTCTTCAAGCCCTCTCCAAATATGGAGCACTCACTTTCACCAAATGGGAGAAAG CAGCTACAGTCACCGTCAAGTCTTCAGAGAGCTTCTCCAAAGAATTCCAAGTCGATGAAA CCAATCGCCTGTTGCTGCAGGAGGTCACATTGCCAGAGATCCCAGGGGAATACAGCACAG TGGTATCAGGGTCAGGATGTGTGTACCTCCAGACATCCCTAAGATACAACGTTCTGCCCA AGAAAGGAAGAAAAGCTCCCTTTACTCTGAAAGTTGATACTGACTCTAAGAATTGTGATG CAGTGGATGCTCACAGGAAAGTCCAGATTCACATCAACATTAGCTACACTGGAGAACGAC CCAGCTCCAACATGGTCATTGTTGACGTGAAGATGGTATCAGGCTTCATTCCTGTAAAAT CCTCTGTGAAAAAGCTCCAAGAAAGGCCTCAGATTCAAAGGACTGAAGTGAATGTCAACC ACGTCCTGATTTACTTTGAAGAGCTAACCAGTGAAGTCTTGAGTTTTTCCTTCTCAGTGG AACAGGACATTCAAGTAAAGAATTTAAAACCAGCTACAGTAAAGGCCTATGACTATTATG AGACAGAGGAATTCGCCATTGAAGAGTACAGTGTTCCCTGCAGTGCTGAATCTGAACATA GAAATGCCTGAAAATGGAAACTTATGGACTCCATCAGATGAACTTTTCCAGAAATGAAGA ACAAAGACTTATCAGGAGAGAAGATGGTGGGAGAAAGAGGGGATGGGAATTACATAAGAT TTGTATGTTGAATAAATTGATGACATTTACAATTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAACAGCTGACAGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCGTCAGTGGTTATC AAAGACAGTTGAATTATAAGCACAGTGATGGTTCATACAGCACCTTTGGGGAACGTGGTG GTGGAAGCCAGGGAAACACTTGGCTGACTGCCTTTGTGCTCAAGTCCTTCTCTCAAGCCC GGGCATACATCTTTGTGGAGGACTCGCACATCCAAGATTCCCGTAACTGGCTCTCCCAGA AGCAAAAGGAAAACGGTTGTTTCCAGCGCTCTGGATCATTGTTCAACAATGCTATTAAGG GCGGGGTAGACGATGAGGTGACACTCTCTGCCTACATCACCATTGCGCTGCTGGAGATGC CACTGCCTGTCACTCACCCAGTTGTCCATAACGCTCTGCTCTGCCTGGAAAAGGCCTGGG AATCCATCTCAGAGGCCCCAGGAAATCTGGTCTATACCAAGGCATTACTGGCCTATGCCT TCACCCTAGCAGGAAACCAGGCCAAGCGAAAGGAGCTGCTTGAATCACTGGACAAAGAGG CTATAAAAACAGAGGACTCAATACACTGGCAACGTCCTGAGAAGTCTCAAGAAAGTGAAT TCGGTTACCAACCCCGGGCTCCTTCTGTTGATGTGGAGATGACCTCTTACTTGCTCCTTG CCCGTGTTACTGCCCAGCCTGCCCCATCTTCAGAAGACCTGTCCATGGCTTCACGTATGG TGAAATGGATCACCAAGCAACAAAACCCCAACGGGGGCTTCTCTTCCACTCAGGATACAG TGGTCGCTCTTCAAGCCCTCTCCAAATATGGAGCACTCACTTTCACCAAATGGGAGAAAG CAGCTACAGTCACCGTCAAGTCTTCAGAGAGCTTCTCCAAAGAATTCCAAGTCGATGAAA CCAATCGCCTGTTGCTGCAGGAGGTCACATTGCCAGAGATCCCAGGGGAATACAGCACAG TGGTATCAGGGTCAGGATGTGTGTACCTCCAGACATCCCTAAGATACAACGTTCTGCCCA AGAAAGGAAGAAAAGCTCCCTTTACTCTGAAAGTTGATACTGACTCTAAGAATTGTGATG CAGTGGATGCTCACAGGAAAGTCCAGATTCACATCAACATTAGCTACACTGGAGAACGAC CCAGCTCCAACATGGTCATTGTTGACGTGAAGATGGTATCAGGCTTCATTCCTGTAAAAT CCTCTGTGAAAAAGCTCCAAGAAAGGCCTCAGATTCAAAGGACTGAAGTGAATGTCAACC ACGTCCTGATTTACTTTGAAGAGCTAACCAGTGAAGTCTTGAGTTTTTCCTTCTCAGTGG AACAGGACATTCAAGTAAAGAATTTAAAACCAGCTACAGTAAAGGCCTATGACTATTATG AGACAGAGGAATTCGCCATTGAAGAGTACAGTGTTCCCTGCAGTGCTGAATCTGAACATA GAAATGCCTGAAAATGGAAACTTATGGACTCCATCAGATGAACTTTTCCAGAAATGAAGA ACAAAGACTTATCAGGAGAGAAGATGGTGGGAGAAAGAGGGGATGGGAATTACATAAGAT TTGTATGTTGAATAAATTGATGACATTTACAATTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 770-888, - strand, RNAz p=0.664481 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 770-888, - strand, RNAz p=0.664481 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 142-300, gnl|bosTau2|chr5 (61006036-61006194) | |
| 142-300, gnl|canFam2|chr27 (39646347-39646187) | |
| 142-300, gnl|danRer3|chr15 (25023464-25023609) | |
| 142-300, gnl|dasNov1|scaffold_10192 (66347-66190) | |
| 142-300, gnl|echTel1|scaffold_189886 (3776-3938) | |
| 142-300, gnl|fr1|chrUn (304143628-304143779) | |
| 142-300, gnl|galGal2|chrUn (104532801-104532947) | |
| 142-300, gnl|hg17|chr12 (9202267-9202427) | |
| 142-300, gnl|Hg17|chr12 (9279112-9278954) | |
| 142-300, gnl|loxAfr1|scaffold_70747 (3336-3184) | |
| 142-300, gnl|mm7|chr6 (122266235-122266075) | |
| 142-300, gnl|Mm7|chr6 (128513919-128513761) | |
| 142-300, gnl|monDom2|scaffold_31 (11771952-11771797) | |
| 142-300, gnl|oryCun1|scaffold_177890 (37060-36913) | |
| 142-300, gnl|panTro1|chrUn_random (57897573-57897413) | |
| 142-300, gnl|rheMac2|chr11 (9304108-9304268) | |
| 142-300, gnl|rn3|chr4 (158480582-158480422) | |
| 142-300, gnl|tetNig1|chr16 (8119601-8119746) | |
| 142-300, gnl|xenTro1|scaffold_337 (442160-442015) | |
| 375-548, gnl|bosTau2|chr5 (61007370-61007543) | |
| 375-548, gnl|canFam2|chr27 (39647340-39647131) | |
| 375-548, gnl|dasNov1|scaffold_10192 (67750-67545) | |
| 375-548, gnl|echTel1|scaffold_189886 (1828-2027) | |
| 375-548, gnl|fr1|chrUn (304143224-304143402) | |
| 375-548, gnl|galGal2|chrUn (104530085-104530263) | |
| 375-548, gnl|hg17|chr12 (9201028-9201240) | |
| 375-548, gnl|Hg17|chr12 (9278175-9278002) | |
| 375-548, gnl|loxAfr1|scaffold_70747 (4764-4565) | |
| 375-548, gnl|mm7|chr6 (121636073-121635879) | |
| 375-548, gnl|Mm7|chr6 (128513098-128512925) | |
| 375-548, gnl|monDom2|scaffold_31 (11774322-11774110) | |
| 375-548, gnl|oryCun1|scaffold_177890 (38482-38273) | |
| 375-548, gnl|panTro1|chrUn_random (57898818-57898606) | |
| 375-548, gnl|rheMac2|chr11 (9302829-9303042) | |
| 375-548, gnl|rn3|chr4 (158308502-158308312) | |
| 375-548, gnl|xenTro1|scaffold_337 (442658-442474) | |
| 770-992, gnl|bosTau2|chr5 (61010231-61010453) | |
| 770-992, gnl|Hg17|chr12 (9276447-9276225) | |
| 770-992, gnl|Mm7|chr6 (128511342-128511120) | |
| 1282-1386, gnl|bosTau2|chr5 (61013306-61013410) | |
| 1282-1386, gnl|canFam2|chr27 (39872357-39872428) | |
| 1282-1386, gnl|danRer3|chr15 (25021557-25021625) | |
| 1282-1386, gnl|dasNov1|scaffold_15693 (43324-43253) | |
| 1282-1386, gnl|echTel1|scaffold_305109 (1038-967) | |
| 1282-1386, gnl|fr1|chrUn (304141916-304141983) | |
| 1282-1386, gnl|galGal2|chrUn (104518981-104519052) | |
| 1282-1386, gnl|hg17|chr12 (9194502-9194573) | |
| 1282-1386, gnl|Hg17|chr12 (9274220-9274116) | |
| 1282-1386, gnl|loxAfr1|scaffold_70747 (11784-11714) | |
| 1282-1386, gnl|mm7|chr6 (122273117-122273046) | |
| 1282-1386, gnl|Mm7|chr6 (128508901-128508797) | |
| 1282-1386, gnl|monDom2|scaffold_31 (11781745-11781674) | |
| 1282-1386, gnl|oryCun1|scaffold_187218 (88125-88053) | |
| 1282-1386, gnl|panTro1|chrUn_random (57905362-57905291) | |
| 1282-1386, gnl|rheMac2|chr11 (9296335-9296406) | |
| 1282-1386, gnl|rn3|chr4 (158487352-158487281) | |
| 1282-1386, gnl|tetNig1|chr16 (8118037-8118105) | |
| 1282-1386, gnl|xenTro1|scaffold_365 (392904-392835) | |
| 1428-1592, gnl|bosTau2|chr5 (61014866-61015036) | |
| 1428-1592, gnl|Hg17|chr12 (9272562-9272394) | |
| 1428-1592, gnl|Mm7|chr6 (128506966-128506809) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-300, gnl|bosTau2|chr5 (61006036-61006194) | |
| 142-300, gnl|canFam2|chr27 (39646347-39646187) | |
| 142-300, gnl|danRer3|chr15 (25023464-25023609) | |
| 142-300, gnl|dasNov1|scaffold_10192 (66347-66190) | |
| 142-300, gnl|echTel1|scaffold_189886 (3776-3938) | |
| 142-300, gnl|fr1|chrUn (304143628-304143779) | |
| 142-300, gnl|galGal2|chrUn (104532801-104532947) | |
| 142-300, gnl|hg17|chr12 (9202267-9202427) | |
| 142-300, gnl|Hg17|chr12 (9279112-9278954) | |
| 142-300, gnl|loxAfr1|scaffold_70747 (3336-3184) | |
| 142-300, gnl|mm7|chr6 (122266235-122266075) | |
| 142-300, gnl|Mm7|chr6 (128513919-128513761) | |
| 142-300, gnl|monDom2|scaffold_31 (11771952-11771797) | |
| 142-300, gnl|oryCun1|scaffold_177890 (37060-36913) | |
| 142-300, gnl|panTro1|chrUn_random (57897573-57897413) | |
| 142-300, gnl|rheMac2|chr11 (9304108-9304268) | |
| 142-300, gnl|rn3|chr4 (158480582-158480422) | |
| 142-300, gnl|tetNig1|chr16 (8119601-8119746) | |
| 142-300, gnl|xenTro1|scaffold_337 (442160-442015) | |
| 375-548, gnl|bosTau2|chr5 (61007370-61007543) | |
| 375-548, gnl|canFam2|chr27 (39647340-39647131) | |
| 375-548, gnl|dasNov1|scaffold_10192 (67750-67545) | |
| 375-548, gnl|echTel1|scaffold_189886 (1828-2027) | |
| 375-548, gnl|fr1|chrUn (304143224-304143402) | |
| 375-548, gnl|galGal2|chrUn (104530085-104530263) | |
| 375-548, gnl|hg17|chr12 (9201028-9201240) | |
| 375-548, gnl|Hg17|chr12 (9278175-9278002) | |
| 375-548, gnl|loxAfr1|scaffold_70747 (4764-4565) | |
| 375-548, gnl|mm7|chr6 (121636073-121635879) | |
| 375-548, gnl|Mm7|chr6 (128513098-128512925) | |
| 375-548, gnl|monDom2|scaffold_31 (11774322-11774110) | |
| 375-548, gnl|oryCun1|scaffold_177890 (38482-38273) | |
| 375-548, gnl|panTro1|chrUn_random (57898818-57898606) | |
| 375-548, gnl|rheMac2|chr11 (9302829-9303042) | |
| 375-548, gnl|rn3|chr4 (158308502-158308312) | |
| 375-548, gnl|xenTro1|scaffold_337 (442658-442474) | |
| 770-992, gnl|bosTau2|chr5 (61010231-61010453) | |
| 770-992, gnl|Hg17|chr12 (9276447-9276225) | |
| 770-992, gnl|Mm7|chr6 (128511342-128511120) | |
| 1282-1386, gnl|bosTau2|chr5 (61013306-61013410) | |
| 1282-1386, gnl|canFam2|chr27 (39872357-39872428) | |
| 1282-1386, gnl|danRer3|chr15 (25021557-25021625) | |
| 1282-1386, gnl|dasNov1|scaffold_15693 (43324-43253) | |
| 1282-1386, gnl|echTel1|scaffold_305109 (1038-967) | |
| 1282-1386, gnl|fr1|chrUn (304141916-304141983) | |
| 1282-1386, gnl|galGal2|chrUn (104518981-104519052) | |
| 1282-1386, gnl|hg17|chr12 (9194502-9194573) | |
| 1282-1386, gnl|Hg17|chr12 (9274220-9274116) | |
| 1282-1386, gnl|loxAfr1|scaffold_70747 (11784-11714) | |
| 1282-1386, gnl|mm7|chr6 (122273117-122273046) | |
| 1282-1386, gnl|Mm7|chr6 (128508901-128508797) | |
| 1282-1386, gnl|monDom2|scaffold_31 (11781745-11781674) | |
| 1282-1386, gnl|oryCun1|scaffold_187218 (88125-88053) | |
| 1282-1386, gnl|panTro1|chrUn_random (57905362-57905291) | |
| 1282-1386, gnl|rheMac2|chr11 (9296335-9296406) | |
| 1282-1386, gnl|rn3|chr4 (158487352-158487281) | |
| 1282-1386, gnl|tetNig1|chr16 (8118037-8118105) | |
| 1282-1386, gnl|xenTro1|scaffold_365 (392904-392835) | |
| 1428-1592, gnl|bosTau2|chr5 (61014866-61015036) | |
| 1428-1592, gnl|Hg17|chr12 (9272562-9272394) | |
| 1428-1592, gnl|Mm7|chr6 (128506966-128506809) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (4.21369) | |
| cli (0.305623) | |
| liv (0.292569) |