Non-Coding RNA Search

Ss1.1-rplun0102_f10.5

Sequence:


               
               CAAGATGTGAGGAGAACTGTGTCAGTCCTGAACAGTTGCTGGTGGTCGTGGGCGCATTAC
TTCTGCTGTGTGGCCTGACTTCTGTGTGCTTCCGCTGCTGTCTCGGTCGTCAGCAAAATG
GAGAAGAGGAGGGCCGACCCCCCTATGAAGTGACCGTCATCGCTTTTGACCATGACAGCA
CTCTGCAAAGCACCATCACTTCCCTGCAGTCAGCGTTTGGCCCTGCAGCTCGAAGAATCC
TAGCCGTGGCTCACTCCCCCGGCTCCCTGAGCCAGCTGCCCACCTCCATGGACACCCTCC
CAGGGTATGAAGAAGCCCTTCACATGACTCGCTTCACTGTTTCAAGGTGTGGGCAGAAGG
CACCTGATCTACCCCCGGTGCCAGAAGAAAAGCAGCTGCCTCCGGTGCACAAGGAGACCC
CAGAACACTCCCCAAACTGATGGGAACTCTGGTTTTATAAATGAGGTGTGGGGGCTCTGT
TCAGAATTGGTTGAGATTCATAGACACATAGACCAGTTTTCCCCCTAACTTTCAGAAAGC
TTAGGATAGCATCTAAACATCATTCTGTGGAAAAGATGGGTTCCAACTCTGCAACTCTTC
AGATGCATGTATTTTCTGATGTGGAATGTTCCAGTTGGGAGCTTGTATTCTTTATCCAGT
GACTAATATTTGCAATTAACCTGTAATGATGCTGATTACTACTGAACAGGAAAACAGCAA
AACTATCTTGGATTCCTGCAGCTATTGAGTTTCTTTACCCAGAGCAAACTGCAAGTTGCT
TGCTTCTCTACCAGTGAATAGACTGTATACATTTATGAAGAAAGACAAGAGTGTAGGCAT
AGCCATAGATATTCATGCACTGAATTTGTGCATCCTTCCTCTCAAGAGAACACTCACCTT
TATACTGAGTATGATGATAATTTTGGATGTCATACAATACCTCACTGGAAATCCAGAATC
CAGAGGTGGGATTTTAAGAGAACACAGTAGGAGCATATCACAGTCTTTCTTTCATTCTGG
TTCTACCCATCAGCAAGTGTAGGAAACTGCATAGAATGCAGTAACAGTTCTATTCATTTT
TTACTTCCTCTGCCCCACAAACACACGCACACATACAGATGCACGCGTGCATATACCCAC
GCACACTTTTCTTAACTCTAAAAAACTGCCATTGCTTTGCTTCTTTCCTCTTTCCTACTT
TGACCACTTAAAGGCCACGTGTCCCTAGATAAATACTTACTTCTAATGGTGGCCTTTACT
GCCACCTAGCGGATGCACGGTTGAAATTCATTCTTCTATTGGAGCGTCTCAGCATCACCT
GTCCTGTTCTTGGAGCACTAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGATGTGAGGAGAACTGTGTCAGTCCTGAACAGTTGCTGGTGGTCGTGGGCGCATTAC
TTCTGCTGTGTGGCCTGACTTCTGTGTGCTTCCGCTGCTGTCTCGGTCGTCAGCAAAATG
GAGAAGAGGAGGGCCGACCCCCCTATGAAGTGACCGTCATCGCTTTTGACCATGACAGCA
CTCTGCAAAGCACCATCACTTCCCTGCAGTCAGCGTTTGGCCCTGCAGCTCGAAGAATCC
TAGCCGTGGCTCACTCCCCCGGCTCCCTGAGCCAGCTGCCCACCTCCATGGACACCCTCC
CAGGGTATGAAGAAGCCCTTCACATGACTCGCTTCACTGTTTCAAGGTGTGGGCAGAAGG
CACCTGATCTACCCCCGGTGCCAGAAGAAAAGCAGCTGCCTCCGGTGCACAAGGAGACCC
CAGAACACTCCCCAAACTGATGGGAACTCTGGTTTTATAAATGAGGTGTGGGGGCTCTGT
TCAGAATTGGTTGAGATTCATAGACACATAGACCAGTTTTCCCCCTAACTTTCAGAAAGC
TTAGGATAGCATCTAAACATCATTCTGTGGAAAAGATGGGTTCCAACTCTGCAACTCTTC
AGATGCATGTATTTTCTGATGTGGAATGTTCCAGTTGGGAGCTTGTATTCTTTATCCAGT
GACTAATATTTGCAATTAACCTGTAATGATGCTGATTACTACTGAACAGGAAAACAGCAA
AACTATCTTGGATTCCTGCAGCTATTGAGTTTCTTTACCCAGAGCAAACTGCAAGTTGCT
TGCTTCTCTACCAGTGAATAGACTGTATACATTTATGAAGAAAGACAAGAGTGTAGGCAT
AGCCATAGATATTCATGCACTGAATTTGTGCATCCTTCCTCTCAAGAGAACACTCACCTT
TATACTGAGTATGATGATAATTTTGGATGTCATACAATACCTCACTGGAAATCCAGAATC
CAGAGGTGGGATTTTAAGAGAACACAGTAGGAGCATATCACAGTCTTTCTTTCATTCTGG
TTCTACCCATCAGCAAGTGTAGGAAACTGCATAGAATGCAGTAACAGTTCTATTCATTTT
TTACTTCCTCTGCCCCACAAACACACGCACACATACAGATGCACGCGTGCATATACCCAC
GCACACTTTTCTTAACTCTAAAAAACTGCCATTGCTTTGCTTCTTTCCTCTTTCCTACTT
TGACCACTTAAAGGCCACGTGTCCCTAGATAAATACTTACTTCTAATGGTGGCCTTTACT
GCCACCTAGCGGATGCACGGTTGAAATTCATTCTTCTATTGGAGCGTCTCAGCATCACCT
GTCCTGTTCTTGGAGCACTAACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37182808|gb|AAQ89204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182808|gb|AAQ89204.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-201, - strand, RNAz p=0.708233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-201, - strand, RNAz p=0.708233

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               37-201, gnl|bosTau2|chr5 (58400329-58400165)
               

               
               37-201, gnl|Hg17|chr12 (10230288-10230455)
               

               
               37-201, gnl|Mm7|chr6 (129539889-129540053)
               


               
               445-1302, gnl|bosTau2|chr5 (58397638-58396783)
               

               
               445-1302, gnl|Hg17|chr12 (10234019-10234864)
               

               
               445-1302, gnl|Mm7|chr6 (129540733-129541564)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-201, gnl|bosTau2|chr5 (58400329-58400165)
               

               
               37-201, gnl|Hg17|chr12 (10230288-10230455)
               

               
               37-201, gnl|Mm7|chr6 (129539889-129540053)
               


               
               445-1302, gnl|bosTau2|chr5 (58397638-58396783)
               

               
               445-1302, gnl|Hg17|chr12 (10234019-10234864)
               

               
               445-1302, gnl|Mm7|chr6 (129540733-129541564)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.278513)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               lun (0.150489)

	37-201, gnl\|bosTau2\|chr5 (58400329-58400165)
	37-201, gnl\|Hg17\|chr12 (10230288-10230455)
	37-201, gnl\|Mm7\|chr6 (129539889-129540053)

	445-1302, gnl\|bosTau2\|chr5 (58397638-58396783)
	445-1302, gnl\|Hg17\|chr12 (10234019-10234864)
	445-1302, gnl\|Mm7\|chr6 (129540733-129541564)