Ss1.1-rplun0103_l22.5
|
CTTTCTACGGAGCCCGACTGACTGGCGCCTCTGCTGTGTGCACGCTCGGCCACGGGGGAC
AGAAGTGACGGGCGGCCACAATGCGGCTCTGCCTCCTCCTGTGCCTGGTGCTTCTCAGCC
CGCGGGGGGCCTCCCTTGGCCGCCACCACTCCCGGGAGACCAAGAAGAGAGTCCTGAAGT
TGCCTCCTGCAGTCGCCACGGTGGCCCCTGGCATCAGGGACTTTACCTTTGACCTCTACA
GGACCTTGGCCGCAGCCAGCCCGGAACAGAATGTCTTCTTCTCCCCTCTGAGCATCTCCA
TGAGCCTGGCCATGCTCTCCCTGGGGGCTCAGTCCAGCACCAAGGCACAGATCCTGGAGG
GCCTGGGTCTCAACCCCCAGGAGGGCCCAGAGGAGGAGCTCCACAGCGCCTCCCAGCGGC
TGCTGCGGGAGCTTGGGCAGCCCAGAGAGGATCTCCAGCTGAGCCTGGGCAACGCCCTTT
TCACCAAGCCCACCCTGTCCATCCAGGAGGCCTTCCTGGGCACCCTGAGGACGCGCTACC
TGGCAGATGTCTTCCCCACTGATTTTGAGGACCCAGAAGGGGCCCAGAAGCAGATCAACA
ATTATGTGGTGAAGCAAACGAAAGGCAAGATTGTGGACTTGGTTAAGGGCTTGGATGGCA
CCGAGGTCATGGTTATGGTGAATTACATATTCTTTAAAGCGAAGTGGGAGACAAGCTTCA
ACCACAAAATCACCCACGAGCAGGACTTCCACGTGACCTCAGAGACGGTGGTGCGGGTGC
CCATGATGAAACGTGAGGACCAGTTTTACTACCTCCTGGACCGAAACCTCTCCTGCAAGG
TGGTAGGGGTCCCCTACCAAGGCAATGCCACCGCCTTCTTCGTTCTCCCTCAAGAGGGCG
GGATGGAGCAGGTGGAGAAGGGCCTGAAGGAGAAGACACTGAGGAAGTGGCTCAAGATGT
CTATGAAGAGGCAGCTTGAGCTTCACCTCCCCAAGTTCTCCATTGAGGGCTCCTATCAGC
TGGAGAACGTCCTCCCCAAGCTGGGGATCAGAGATGTCTTCACCTCCCACGCGGACCTGA
CCGGCATCAGCAATACCTCCAACATCCAGGTGTCCGAGATGGTGCACAAAGCCGTGGTGG
AGGTGGACGAGTCGGGGACCAAAGCGGCTGCAGCCACGGGGACCATCTTTATGTTCAGAT
CTGCCCGGATAAGCTCTCAAAGGATAGTGTTCAACAGGCCCTTTCTGATGTTCATTGTGG
AGAACAGCAAGAACATCCTTTTTGTGGGCAAAGTGACCCACCCTTGAGGCGGGGATGTCT
CCTGAAAGGCACAGGCTTCCGTAGTGAAGGGTGAGGGTGCATTGTGGCTGTCTATCTGCT
AGCAGCTGGTGATTTACACAGGTTTAGTTGACTGATGAGGTTTTCACAGATAATAATAAT
AATAATAATAATAGTAACATTGAAATACTGATGATTGCTTCTTTTCACACAATTGCAAGA
CATGAATGCCTTAGAGAACATTCGGTACTGCCCTCACATTCGGTACTGAGATTAACACTG
AGGCTAGGAGAAGCTGGTTGACTTGGAGAAGCTGGTTGACTTGCCTGAGGCCACACAGCA
TGTTGGTGGCAGAGAGAAGCCCAGCCAGCCCAATACCACTGAGCTCTGCAATACCACTGA
GCTCTGCAGAAGGGTTGTTCCATTAGCTATTGCCAGCAGAAAGTGTATTCCCAAGCCTAG
TACCCCAACTGTCGGCAGTACCAGCTATCAGCTCATTAAGGTTGGCAAAGAACACCAGAA
TGAGGCTTTGGAATGGGGCTCCTGTCCCAGCTGTGTGACATTGGGTGATCCTGTCCCTCT
CTGGACTTTGCTTTCCCTCATAGATACAGTGAAGGGTCAGGTCAAGGATGGAAGGATCCT
TGAAATCATATAAAAAGGCTAGAATGTTCCCCAATAATTACAGTTAATTTAGTACTTTTG
AGTGTTGCTCATCTTTCAAAAAAAGCAGGGGGCCAGCAAGGTGGAAATGGCCATCCCAGG
ATTGTACTGTCCTTGGGGTTAATTTTCAACCTCATGGGCTTGGCTAGGAGTGGGAGAAGG
GAGGCCTGTTGCAAACACTGAAGACCCTGGTGACTAACTGTGGATTTTAGTGCCAGCAAT
AACAATAAAGCATTTTGCAAACAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTTCTACGGAGCCCGACTGACTGGCGCCTCTGCTGTGTGCACGCTCGGCCACGGGGGAC
AGAAGTGACGGGCGGCCACAATGCGGCTCTGCCTCCTCCTGTGCCTGGTGCTTCTCAGCC
CGCGGGGGGCCTCCCTTGGCCGCCACCACTCCCGGGAGACCAAGAAGAGAGTCCTGAAGT
TGCCTCCTGCAGTCGCCACGGTGGCCCCTGGCATCAGGGACTTTACCTTTGACCTCTACA
GGACCTTGGCCGCAGCCAGCCCGGAACAGAATGTCTTCTTCTCCCCTCTGAGCATCTCCA
TGAGCCTGGCCATGCTCTCCCTGGGGGCTCAGTCCAGCACCAAGGCACAGATCCTGGAGG
GCCTGGGTCTCAACCCCCAGGAGGGCCCAGAGGAGGAGCTCCACAGCGCCTCCCAGCGGC
TGCTGCGGGAGCTTGGGCAGCCCAGAGAGGATCTCCAGCTGAGCCTGGGCAACGCCCTTT
TCACCAAGCCCACCCTGTCCATCCAGGAGGCCTTCCTGGGCACCCTGAGGACGCGCTACC
TGGCAGATGTCTTCCCCACTGATTTTGAGGACCCAGAAGGGGCCCAGAAGCAGATCAACA
ATTATGTGGTGAAGCAAACGAAAGGCAAGATTGTGGACTTGGTTAAGGGCTTGGATGGCA
CCGAGGTCATGGTTATGGTGAATTACATATTCTTTAAAGCGAAGTGGGAGACAAGCTTCA
ACCACAAAATCACCCACGAGCAGGACTTCCACGTGACCTCAGAGACGGTGGTGCGGGTGC
CCATGATGAAACGTGAGGACCAGTTTTACTACCTCCTGGACCGAAACCTCTCCTGCAAGG
TGGTAGGGGTCCCCTACCAAGGCAATGCCACCGCCTTCTTCGTTCTCCCTCAAGAGGGCG
GGATGGAGCAGGTGGAGAAGGGCCTGAAGGAGAAGACACTGAGGAAGTGGCTCAAGATGT
CTATGAAGAGGCAGCTTGAGCTTCACCTCCCCAAGTTCTCCATTGAGGGCTCCTATCAGC
TGGAGAACGTCCTCCCCAAGCTGGGGATCAGAGATGTCTTCACCTCCCACGCGGACCTGA
CCGGCATCAGCAATACCTCCAACATCCAGGTGTCCGAGATGGTGCACAAAGCCGTGGTGG
AGGTGGACGAGTCGGGGACCAAAGCGGCTGCAGCCACGGGGACCATCTTTATGTTCAGAT
CTGCCCGGATAAGCTCTCAAAGGATAGTGTTCAACAGGCCCTTTCTGATGTTCATTGTGG
AGAACAGCAAGAACATCCTTTTTGTGGGCAAAGTGACCCACCCTTGAGGCGGGGATGTCT
CCTGAAAGGCACAGGCTTCCGTAGTGAAGGGTGAGGGTGCATTGTGGCTGTCTATCTGCT
AGCAGCTGGTGATTTACACAGGTTTAGTTGACTGATGAGGTTTTCACAGATAATAATAAT
AATAATAATAATAGTAACATTGAAATACTGATGATTGCTTCTTTTCACACAATTGCAAGA
CATGAATGCCTTAGAGAACATTCGGTACTGCCCTCACATTCGGTACTGAGATTAACACTG
AGGCTAGGAGAAGCTGGTTGACTTGGAGAAGCTGGTTGACTTGCCTGAGGCCACACAGCA
TGTTGGTGGCAGAGAGAAGCCCAGCCAGCCCAATACCACTGAGCTCTGCAATACCACTGA
GCTCTGCAGAAGGGTTGTTCCATTAGCTATTGCCAGCAGAAAGTGTATTCCCAAGCCTAG
TACCCCAACTGTCGGCAGTACCAGCTATCAGCTCATTAAGGTTGGCAAAGAACACCAGAA
TGAGGCTTTGGAATGGGGCTCCTGTCCCAGCTGTGTGACATTGGGTGATCCTGTCCCTCT
CTGGACTTTGCTTTCCCTCATAGATACAGTGAAGGGTCAGGTCAAGGATGGAAGGATCCT
TGAAATCATATAAAAAGGCTAGAATGTTCCCCAATAATTACAGTTAATTTAGTACTTTTG
AGTGTTGCTCATCTTTCAAAAAAAGCAGGGGGCCAGCAAGGTGGAAATGGCCATCCCAGG
ATTGTACTGTCCTTGGGGTTAATTTTCAACCTCATGGGCTTGGCTAGGAGTGGGAGAAGG
GAGGCCTGTTGCAAACACTGAAGACCCTGGTGACTAACTGTGGATTTTAGTGCCAGCAAT
AACAATAAAGCATTTTGCAAACAAAAAAAAAAAAAA
|
|
gi|28603766|ref|NP_788819.1| |
Protein identifier
|
gi|28603766|ref|NP_788819.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
75-583, gnl|bosTau2|chr21 (39175789-39175293) |
|
75-583, gnl|Hg17|chr14 (94123447-94123955) |
| |
|
698-971, gnl|bosTau2|chr21 (39173461-39173188) |
|
698-971, gnl|canFam2|chr8 (66614370-66614601) |
|
698-971, gnl|danRer3|chr20 (9604519-9604275) |
|
698-971, gnl|dasNov1|scaffold_6611 (5539-5298) |
|
698-971, gnl|echTel1|scaffold_279289 (43142-42898) |
|
698-971, gnl|fr1|chrUn (170364644-170364887) |
|
698-971, gnl|galGal2|chr5 (42344848-42344610) |
|
698-971, gnl|hg17|chr14 (94126110-94126351) |
|
698-971, gnl|Hg17|chr14 (94126129-94126402) |
|
698-971, gnl|loxAfr1|scaffold_51527 (26189-25946) |
|
698-971, gnl|mm7|chr12 (101597448-101597686) |
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698-971, gnl|Mm7|chr12 (101905447-101905702) |
|
698-971, gnl|monDom2|scaffold_6 (72185553-72185794) |
|
698-971, gnl|oryCun1|scaffold_199187 (14463-14704) |
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698-971, gnl|panTro1|chr15 (94566636-94566877) |
|
698-971, gnl|rheMac2|chr7 (157811085-157811326) |
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698-971, gnl|rn3|chr6 (128162575-128162816) |
| |
|
1117-1585, gnl|bosTau2|chr21 (39172121-39171668) |
|
1117-1585, gnl|Hg17|chr14 (94128145-94128596) |
| |
|
1586-2183, gnl|bosTau2|chr21 (39171685-39171088) |
|
1586-2183, gnl|Hg17|chr14 (94128579-94129205) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
75-583, gnl|bosTau2|chr21 (39175789-39175293) |
|
75-583, gnl|Hg17|chr14 (94123447-94123955) |
| |
|
698-971, gnl|bosTau2|chr21 (39173461-39173188) |
|
698-971, gnl|canFam2|chr8 (66614370-66614601) |
|
698-971, gnl|danRer3|chr20 (9604519-9604275) |
|
698-971, gnl|dasNov1|scaffold_6611 (5539-5298) |
|
698-971, gnl|echTel1|scaffold_279289 (43142-42898) |
|
698-971, gnl|fr1|chrUn (170364644-170364887) |
|
698-971, gnl|galGal2|chr5 (42344848-42344610) |
|
698-971, gnl|hg17|chr14 (94126110-94126351) |
|
698-971, gnl|Hg17|chr14 (94126129-94126402) |
|
698-971, gnl|loxAfr1|scaffold_51527 (26189-25946) |
|
698-971, gnl|mm7|chr12 (101597448-101597686) |
|
698-971, gnl|Mm7|chr12 (101905447-101905702) |
|
698-971, gnl|monDom2|scaffold_6 (72185553-72185794) |
|
698-971, gnl|oryCun1|scaffold_199187 (14463-14704) |
|
698-971, gnl|panTro1|chr15 (94566636-94566877) |
|
698-971, gnl|rheMac2|chr7 (157811085-157811326) |
|
698-971, gnl|rn3|chr6 (128162575-128162816) |
| |
|
1117-1585, gnl|bosTau2|chr21 (39172121-39171668) |
|
1117-1585, gnl|Hg17|chr14 (94128145-94128596) |
| |
|
1586-2183, gnl|bosTau2|chr21 (39171685-39171088) |
|
1586-2183, gnl|Hg17|chr14 (94128579-94129205) |
|
lun (2.40783) |
|
cli (2.29218) |
|
fli (1.21729) |
|
eli (0.759071) |
|
cte (0.58548) |
|
ova (0.129132) |
|
lun (2.40783) |
|
cli (2.29218) |
|
fli (1.21729) |
|
eli (0.759071) |
|
cte (0.58548) |
|
ova (0.129132) |
