Non-Coding RNA Search

Ss1.1-rplun0106_i2.5

Sequence:


               
               CAAACACACGCATTGTTGGAGGAACCGACTCTTTTTTGGGAGAATGGCCCTGGCAAGTCA
GCTTGCAGGCGAAGCTCAGAGCTCAAAACCACCTGTGTGGAGGGTCAATCATTGGACACC
AGTGGGTCCTAACTGCTGCCCATTGCTTTGATGGGCTTTCCCTGCCGGATATTTGGCGCA
TTTATGGTGGCATTTTAAATATATCAGAGATAACAAAAGAAACACCTTTCTCACAAGTAA
AAGAGATTATTATTCACCAAAATTATAAAATCTTGGAAAGTGGTCATGATATTGCCTTAC
TAAAACTTGAGACTCCTTTGAATTATACTGATTTCCAAAAGCCAATATGCCTACCTTCCA
GAGATGATACAAATGTAGTTTATACCAACTGCTGGGTAACTGGATGGGGCTTCACGGAGG
AAAAAGGTGAAATCCAGAATATCCTACAGAAGGTAAATATTCCTTTGGTATCAAATGAAG
AATGCCAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACACACGCATTGTTGGAGGAACCGACTCTTTTTTGGGAGAATGGCCCTGGCAAGTCA
GCTTGCAGGCGAAGCTCAGAGCTCAAAACCACCTGTGTGGAGGGTCAATCATTGGACACC
AGTGGGTCCTAACTGCTGCCCATTGCTTTGATGGGCTTTCCCTGCCGGATATTTGGCGCA
TTTATGGTGGCATTTTAAATATATCAGAGATAACAAAAGAAACACCTTTCTCACAAGTAA
AAGAGATTATTATTCACCAAAATTATAAAATCTTGGAAAGTGGTCATGATATTGCCTTAC
TAAAACTTGAGACTCCTTTGAATTATACTGATTTCCAAAAGCCAATATGCCTACCTTCCA
GAGATGATACAAATGTAGTTTATACCAACTGCTGGGTAACTGGATGGGGCTTCACGGAGG
AAAAAGGTGAAATCCAGAATATCCTACAGAAGGTAAATATTCCTTTGGTATCAAATGAAG
AATGCCAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56967288|pdb|1XX9|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56967288|pdb|1XX9|B

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               154-330, gnl|bosTau2|chr27 (5541904-5541728)
               

               
               154-330, gnl|Hg17|chr4 (187550890-187551066)
               

               
               154-330, gnl|Mm7|chr8 (44059207-44059031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-330, gnl|bosTau2|chr27 (5541904-5541728)
               

               
               154-330, gnl|Hg17|chr4 (187550890-187551066)
               

               
               154-330, gnl|Mm7|chr8 (44059207-44059031)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.752445)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.752445)

	154-330, gnl\|bosTau2\|chr27 (5541904-5541728)
	154-330, gnl\|Hg17\|chr4 (187550890-187551066)
	154-330, gnl\|Mm7\|chr8 (44059207-44059031)