Non-Coding RNA Search

Ss1.1-rplun0110_g14.5

Sequence:


               
               CTCGAGCCGCGCCGCGGCTCGAGGTCTCTGCATATATGCACATTACATAAGGATCTTAAA
CCAGTCTTGACAGACTAGAAGTTAAGTTTAATACAGAAAATGTCCTGTTCACTTGAAAGA
AAAGACCTACTTTTTAAATGGACAGTATCTTGGTTTTTTTGTTTTTTTTTTTTTAAAGTT
GACTTTTTGTTATAAGTGACCTTTGTCTGGAATGTCTGAAAAGTAGTAAATGCTTTTTGG
TATTGAAGTAATGGGTAACTAAAATGGACTCCATAGTATTGACTGTAGAAGGGGCCTCTA
CAGTATTGACTATATTTTTATAAACTACTGGCAAGGGACTTATCCAGTTGTTAGATCCAT
GTTTTCAGTTCTCTTGGGGGGNCATGTCCTACATTTGCATGGACGGCTGCATGCACTGCC
TAGTCAGCTCGCTTGAAAAGCTCTTGCACTGGTATCGTCTTGAACCTCCCTCCTGCTCCA
CTCTCTAGAGCAGCGTCTTAGTTTAAGGCTTAACATCTTGCACCACGACAGCTTTGCCTC
GGGGGCGGGGGGGCGGTATGTGTTAGTCCATTTGTCCTCCACTTTTACGGGAATGTGAGA
GTCCTCAAGCCCATCGCGTTATCTGCTCTCTGTAGGGTTCAGGGGCACTGGCTGAGGCAG
AACCCCAAATTCTTTCCATTGGCGTCAGACCTCTTGGTACCAAGTTCTGTTCCTTGCTCA
CCACTGTGCGTGCTCATTGATCTAACAGTCATGCCCTGTGGTGCGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGCCGCGCCGCGGCTCGAGGTCTCTGCATATATGCACATTACATAAGGATCTTAAA
CCAGTCTTGACAGACTAGAAGTTAAGTTTAATACAGAAAATGTCCTGTTCACTTGAAAGA
AAAGACCTACTTTTTAAATGGACAGTATCTTGGTTTTTTTGTTTTTTTTTTTTTAAAGTT
GACTTTTTGTTATAAGTGACCTTTGTCTGGAATGTCTGAAAAGTAGTAAATGCTTTTTGG
TATTGAAGTAATGGGTAACTAAAATGGACTCCATAGTATTGACTGTAGAAGGGGCCTCTA
CAGTATTGACTATATTTTTATAAACTACTGGCAAGGGACTTATCCAGTTGTTAGATCCAT
GTTTTCAGTTCTCTTGGGGGGNCATGTCCTACATTTGCATGGACGGCTGCATGCACTGCC
TAGTCAGCTCGCTTGAAAAGCTCTTGCACTGGTATCGTCTTGAACCTCCCTCCTGCTCCA
CTCTCTAGAGCAGCGTCTTAGTTTAAGGCTTAACATCTTGCACCACGACAGCTTTGCCTC
GGGGGCGGGGGGGCGGTATGTGTTAGTCCATTTGTCCTCCACTTTTACGGGAATGTGAGA
GTCCTCAAGCCCATCGCGTTATCTGCTCTCTGTAGGGTTCAGGGGCACTGGCTGAGGCAG
AACCCCAAATTCTTTCCATTGGCGTCAGACCTCTTGGTACCAAGTTCTGTTCCTTGCTCA
CCACTGTGCGTGCTCATTGATCTAACAGTCATGCCCTGTGGTGCGAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               205-361, - strand, RNAz p=0.903524
               

               
               266-372, - strand, RNAz p=0.951252

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-361, - strand, RNAz p=0.903524
               

               
               266-372, - strand, RNAz p=0.951252

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               24-767, gnl|bosTau2|chr16 (14056135-14055387)
               

               
               24-767, gnl|canFam2|chr7 (43142727-43141445)
               

               
               24-767, gnl|dasNov1|scaffold_96235 (2138-3483)
               

               
               24-767, gnl|echTel1|scaffold_246563 (13307-14605)
               

               
               24-767, gnl|galGal2|chr3 (13960499-13959214)
               

               
               24-767, gnl|hg17|chr1 (220652194-220653531)
               

               
               24-767, gnl|Hg17|chr1 (220652472-220653204)
               

               
               24-767, gnl|loxAfr1|scaffold_14851 (17731-16446)
               

               
               24-767, gnl|mm7|chr1 (182300851-182299582)
               

               
               24-767, gnl|Mm7|chr1 (182300582-182299871)
               

               
               24-767, gnl|monDom2|scaffold_13 (31368723-31370117)
               

               
               24-767, gnl|oryCun1|scaffold_201050 (43694-42374)
               

               
               24-767, gnl|panTro1|chr1 (204461007-204462344)
               

               
               24-767, gnl|rheMac2|chr1 (146332827-146331492)
               

               
               24-767, gnl|rn3|chr13 (98506605-98505398)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-767, gnl|bosTau2|chr16 (14056135-14055387)
               

               
               24-767, gnl|canFam2|chr7 (43142727-43141445)
               

               
               24-767, gnl|dasNov1|scaffold_96235 (2138-3483)
               

               
               24-767, gnl|echTel1|scaffold_246563 (13307-14605)
               

               
               24-767, gnl|galGal2|chr3 (13960499-13959214)
               

               
               24-767, gnl|hg17|chr1 (220652194-220653531)
               

               
               24-767, gnl|Hg17|chr1 (220652472-220653204)
               

               
               24-767, gnl|loxAfr1|scaffold_14851 (17731-16446)
               

               
               24-767, gnl|mm7|chr1 (182300851-182299582)
               

               
               24-767, gnl|Mm7|chr1 (182300582-182299871)
               

               
               24-767, gnl|monDom2|scaffold_13 (31368723-31370117)
               

               
               24-767, gnl|oryCun1|scaffold_201050 (43694-42374)
               

               
               24-767, gnl|panTro1|chr1 (204461007-204462344)
               

               
               24-767, gnl|rheMac2|chr1 (146332827-146331492)
               

               
               24-767, gnl|rn3|chr13 (98506605-98505398)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	205-361, - strand, RNAz p=0.903524
	266-372, - strand, RNAz p=0.951252

	24-767, gnl\|bosTau2\|chr16 (14056135-14055387)
	24-767, gnl\|canFam2\|chr7 (43142727-43141445)
	24-767, gnl\|dasNov1\|scaffold_96235 (2138-3483)
	24-767, gnl\|echTel1\|scaffold_246563 (13307-14605)
	24-767, gnl\|galGal2\|chr3 (13960499-13959214)
	24-767, gnl\|hg17\|chr1 (220652194-220653531)
	24-767, gnl\|Hg17\|chr1 (220652472-220653204)
	24-767, gnl\|loxAfr1\|scaffold_14851 (17731-16446)
	24-767, gnl\|mm7\|chr1 (182300851-182299582)
	24-767, gnl\|Mm7\|chr1 (182300582-182299871)
	24-767, gnl\|monDom2\|scaffold_13 (31368723-31370117)
	24-767, gnl\|oryCun1\|scaffold_201050 (43694-42374)
	24-767, gnl\|panTro1\|chr1 (204461007-204462344)
	24-767, gnl\|rheMac2\|chr1 (146332827-146331492)
	24-767, gnl\|rn3\|chr13 (98506605-98505398)