Ss1.1-rplun0113_o10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTGGGTGTGAAAGCAGCAGGCAAAGCACAGCACAACCAGCTAAAAGGAAAATCCGAG GAGAGAATCACGGAGGACAGTGGCCATGGACCTGATCCCAGGCTTTTCCACAGAAACCTG GGTTCTCCTGGCTACCAGCCTGGTGCTCCTCTATCTATATGGGACTTATTCACATGGCCT TTTTAAGAAGCTGGGGATTCCTGGGCCAAGACCTCTGCCTTATTTTGGAAATATCCTGGG CTACCGTAAGGGTGTTGACCATTTTGACAAAAAGTGTTTTCAACAGTATGGGAAAATGTG GGGGTTTTTTGATGGTCGGCAGCCCGTGTTGGCTATCACCGATCCAGACATGATCAAAAC GGTCCTCGTGAAAGAATGTTATTCTGTCTTCACAAACCGGCGGTCTTTTGGTCCACGTGG TGCTATGAGAAGTGCTGTCTCTCTGGCTGAGGATGAAGAGTGGAAAAGAATCCGAACGTT GCTGTCTCCGACCTTCACCAGTGGAAAGCTCAAGGAGATGTTCCCCATCATTAGCCATTA TGGAGACTTGTTGGTGAGCAACCTGAGGAAGGAAGCAGAGAAAGGCAAACCTGTGACCAT GAAAGACATCTTTGGGGCCTACAGCATGGACGTGATCACTAGCACAGCATTTGGAGTGAA CGTCGATTCCCTCAACAACCCACAAGACCCCTTTGTGGAAAACAGCAGGAAGCTCTTAAA ATTTAGTTTCTTCAGTCCATTCTTTCTCTCAATAATATTCTTTCCATTCTTGACCCCGAT CTTGGAAGTATTAAACATCACTCTGTTTCCCAAAAGTGTTGTGAATTTTTTCACGAGATC CATAAAAAGGATGAAGGAAAGTCGCCTCAAAGATACACAAAAGCACCGAGTGGACCTTCT TCAGCTGATGATTAACTCCCAGAATTCCAAAGAAACGGACGCCCATAAAGGTCTGTCCAA TGAAGAACTTGTGGCCCAAGGTGTTATTTTTATTTTTGCTGGGTATGAGACCACTAGCAG TTCTCTCTCCCTCCTTGTGTATGAATTGGCCACTCACCCTGACGTCCAGCAGAAGCTGCA GGAGGAGATTGATGCGACTTTCCCCAATAAGGTACCTCCCACCTACGATGGTCTGGCGCA AATGGAGTATCTTGACATGGTGGTGAACGAATCTCTCAGAATATTCCCAGTTACTCCTAG ACTTGAGAGGTCCTGTAAGAAGGATGTGGAAATCCATGGCGTGTTCGTTCCCAAAGGGAC CGTGATGATGGTGCCAATCTTTGCGCTTCACAGAGCCCCGGAGCTCTGGCCAGAGCCTGA GGAGTTCCGCCCTGAAAGGTTCAGTAAGAAGAACAAGGACACCATAAACCCTTACACTTA CCTGCCCTTTGGGACTGGACCCCGCAACTGCATTGGCATGAGGTTTGCCCTCATGAACAT GAAACTCGCTCTCGTCAGAGTCCTGCAGAACTTCTCCTTCAAACCTTGTAAAGAAACACA GATCCCCCTGAAAATAAGCTCCCAGGGACTTATCCAACCAGAAAAACCTATTGTTCTAAT GGTTGTGCCCAGAGATGGGACCACAAGTGGAGCCTGACTTTCCCTAAGGACTCGGGCTTG GTTCCTCAAGGAAGCTGCATCCCAGAGTACCAGAGACCTTGATTTCCTTTGTGATAAGAA CTCGAAATAAAGATAAGCTTAATCTAGTGCATTCGATGGATGATTAGAGATTCTGCACAT TCCTTAGCTTCTCACTGTCTATGTAGAGTGTTACATACTGTGTCATTTGAAAGAGGTGAT TAATGAGGGTCAGACATGCAGACTCAGCTTCTTGGGTTCTCCTAGGAACAAACTTTAATG AAAATAAGAGTTATTGTGGTGGCCAAAGTGGATATTTGTGTTACAGATTTTATTTTGAAT ATTCTAAAATATTATATGAAGTCAATAAACATCCCTTTACAAAAGTAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTGGGTGTGAAAGCAGCAGGCAAAGCACAGCACAACCAGCTAAAAGGAAAATCCGAG GAGAGAATCACGGAGGACAGTGGCCATGGACCTGATCCCAGGCTTTTCCACAGAAACCTG GGTTCTCCTGGCTACCAGCCTGGTGCTCCTCTATCTATATGGGACTTATTCACATGGCCT TTTTAAGAAGCTGGGGATTCCTGGGCCAAGACCTCTGCCTTATTTTGGAAATATCCTGGG CTACCGTAAGGGTGTTGACCATTTTGACAAAAAGTGTTTTCAACAGTATGGGAAAATGTG GGGGTTTTTTGATGGTCGGCAGCCCGTGTTGGCTATCACCGATCCAGACATGATCAAAAC GGTCCTCGTGAAAGAATGTTATTCTGTCTTCACAAACCGGCGGTCTTTTGGTCCACGTGG TGCTATGAGAAGTGCTGTCTCTCTGGCTGAGGATGAAGAGTGGAAAAGAATCCGAACGTT GCTGTCTCCGACCTTCACCAGTGGAAAGCTCAAGGAGATGTTCCCCATCATTAGCCATTA TGGAGACTTGTTGGTGAGCAACCTGAGGAAGGAAGCAGAGAAAGGCAAACCTGTGACCAT GAAAGACATCTTTGGGGCCTACAGCATGGACGTGATCACTAGCACAGCATTTGGAGTGAA CGTCGATTCCCTCAACAACCCACAAGACCCCTTTGTGGAAAACAGCAGGAAGCTCTTAAA ATTTAGTTTCTTCAGTCCATTCTTTCTCTCAATAATATTCTTTCCATTCTTGACCCCGAT CTTGGAAGTATTAAACATCACTCTGTTTCCCAAAAGTGTTGTGAATTTTTTCACGAGATC CATAAAAAGGATGAAGGAAAGTCGCCTCAAAGATACACAAAAGCACCGAGTGGACCTTCT TCAGCTGATGATTAACTCCCAGAATTCCAAAGAAACGGACGCCCATAAAGGTCTGTCCAA TGAAGAACTTGTGGCCCAAGGTGTTATTTTTATTTTTGCTGGGTATGAGACCACTAGCAG TTCTCTCTCCCTCCTTGTGTATGAATTGGCCACTCACCCTGACGTCCAGCAGAAGCTGCA GGAGGAGATTGATGCGACTTTCCCCAATAAGGTACCTCCCACCTACGATGGTCTGGCGCA AATGGAGTATCTTGACATGGTGGTGAACGAATCTCTCAGAATATTCCCAGTTACTCCTAG ACTTGAGAGGTCCTGTAAGAAGGATGTGGAAATCCATGGCGTGTTCGTTCCCAAAGGGAC CGTGATGATGGTGCCAATCTTTGCGCTTCACAGAGCCCCGGAGCTCTGGCCAGAGCCTGA GGAGTTCCGCCCTGAAAGGTTCAGTAAGAAGAACAAGGACACCATAAACCCTTACACTTA CCTGCCCTTTGGGACTGGACCCCGCAACTGCATTGGCATGAGGTTTGCCCTCATGAACAT GAAACTCGCTCTCGTCAGAGTCCTGCAGAACTTCTCCTTCAAACCTTGTAAAGAAACACA GATCCCCCTGAAAATAAGCTCCCAGGGACTTATCCAACCAGAAAAACCTATTGTTCTAAT GGTTGTGCCCAGAGATGGGACCACAAGTGGAGCCTGACTTTCCCTAAGGACTCGGGCTTG GTTCCTCAAGGAAGCTGCATCCCAGAGTACCAGAGACCTTGATTTCCTTTGTGATAAGAA CTCGAAATAAAGATAAGCTTAATCTAGTGCATTCGATGGATGATTAGAGATTCTGCACAT TCCTTAGCTTCTCACTGTCTATGTAGAGTGTTACATACTGTGTCATTTGAAAGAGGTGAT TAATGAGGGTCAGACATGCAGACTCAGCTTCTTGGGTTCTCCTAGGAACAAACTTTAATG AAAATAAGAGTTATTGTGGTGGCCAAAGTGGATATTTGTGTTACAGATTTTATTTTGAAT ATTCTAAAATATTATATGAAGTCAATAAACATCCCTTTACAAAAGTAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 19-156, gnl|bosTau2|chr25 (34516041-34516178) | |
| 19-156, gnl|Hg17|chr7 (99062227-99062362) | |
| 19-156, gnl|Mm7|chr5 (136839573-136839444) | |
| 303-403, gnl|bosTau2|chr25 (34662979-34663079) | |
| 303-403, gnl|canFam2|chr6 (12867847-12868082) | |
| 303-403, gnl|dasNov1|scaffold_36563 (3465-3715) | |
| 303-403, gnl|echTel1|scaffold_262799 (3731-3476) | |
| 303-403, gnl|hg17|chr7 (4316474-4316729) | |
| 303-403, gnl|Hg17|chr7 (98914954-98914854) | |
| 303-403, gnl|loxAfr1|scaffold_73906 (4950-4693) | |
| 303-403, gnl|mm7|chr5 (136833554-136833822) | |
| 303-403, gnl|Mm7|chr5 (136833676-136833576) | |
| 303-403, gnl|panTro1|chr6 (4712549-4712804) | |
| 303-403, gnl|rheMac2|chr3 (42505104-42505397) | |
| 303-403, gnl|rn3|chr12 (17159344-17159076) | |
| 406-517, gnl|bosTau2|chr25 (34666328-34666439) | |
| 406-517, gnl|canFam2|chr6 (12750037-12750173) | |
| 406-517, gnl|danRer3|chr25 (23348941-23348815) | |
| 406-517, gnl|dasNov1|scaffold_36563 (1459-1594) | |
| 406-517, gnl|echTel1|scaffold_262799 (6583-6449) | |
| 406-517, gnl|fr1|chrUn (47037654-47037554) | |
| 406-517, gnl|galGal2|chr14 (6083607-6083718) | |
| 406-517, gnl|hg17|chr7 (98909223-98909357) | |
| 406-517, gnl|Hg17|chr7 (98909337-98909226) | |
| 406-517, gnl|loxAfr1|scaffold_73906 (7619-7486) | |
| 406-517, gnl|mm7|chr5 (136829838-136829974) | |
| 406-517, gnl|Mm7|chr5 (136829952-136829841) | |
| 406-517, gnl|monDom2|scaffold_17 (3715523-3715657) | |
| 406-517, gnl|panTro1|chr6 (100662056-100662190) | |
| 406-517, gnl|rheMac2|chr3 (46866034-46866170) | |
| 406-517, gnl|rn3|chr12 (17163311-17163176) | |
| 406-517, gnl|tetNig1|chr9 (5139838-5139953) | |
| 406-517, gnl|xenTro1|scaffold_73 (1906748-1906874) | |
| 607-755, gnl|bosTau2|chr25 (32985209-32985357) | |
| 607-755, gnl|canFam2|chr6 (12858845-12858963) | |
| 607-755, gnl|danRer3|chr25 (23352584-23352466) | |
| 607-755, gnl|dasNov1|scaffold_48899 (9078-9174) | |
| 607-755, gnl|echTel1|scaffold_262799 (8454-8336) | |
| 607-755, gnl|fr1|chrUn (52482514-52482632) | |
| 607-755, gnl|galGal2|chr14 (6048658-6048540) | |
| 607-755, gnl|hg17|chr7 (99010626-99010744) | |
| 607-755, gnl|Hg17|chr7 (99010776-99010628) | |
| 607-755, gnl|loxAfr1|scaffold_21760 (20904-21022) | |
| 607-755, gnl|mm7|chr5 (136827916-136828034) | |
| 607-755, gnl|Mm7|chr5 (136828066-136827918) | |
| 607-755, gnl|monDom2|scaffold_17 (3836362-3836480) | |
| 607-755, gnl|oryCun1|scaffold_95532 (9600-9718) | |
| 607-755, gnl|panTro1|chr6 (100795628-100795746) | |
| 607-755, gnl|rheMac2|chr3 (47037831-47037949) | |
| 607-755, gnl|rn3|chr12 (9135570-9135688) | |
| 607-755, gnl|tetNig1|chr9 (5139119-5139237) | |
| 607-755, gnl|xenTro1|scaffold_73 (1903062-1903180) | |
| 1110-1343, gnl|bosTau2|chr25 (34626524-34626757) | |
| 1110-1343, gnl|canFam2|chr6 (12788905-12789151) | |
| 1110-1343, gnl|danRer3|chr25 (23354364-23354119) | |
| 1110-1343, gnl|dasNov1|scaffold_56184 (6726-6972) | |
| 1110-1343, gnl|echTel1|scaffold_51893 (2114-1865) | |
| 1110-1343, gnl|fr1|chrUn (52475509-52475745) | |
| 1110-1343, gnl|galGal2|chr14 (6080067-6080299) | |
| 1110-1343, gnl|hg17|chr7 (98951296-98951542) | |
| 1110-1343, gnl|Hg17|chr7 (98951537-98951304) | |
| 1110-1343, gnl|loxAfr1|scaffold_21760 (1374-1621) | |
| 1110-1343, gnl|mm7|chr5 (136816787-136817033) | |
| 1110-1343, gnl|Mm7|chr5 (136817028-136816795) | |
| 1110-1343, gnl|monDom2|scaffold_17 (3768485-3768720) | |
| 1110-1343, gnl|oryCun1|scaffold_142799 (13188-12943) | |
| 1110-1343, gnl|panTro1|chr6 (100735071-100735318) | |
| 1110-1343, gnl|rheMac2|chr3 (46907741-46907986) | |
| 1110-1343, gnl|rn3|chr12 (9125838-9126084) | |
| 1110-1343, gnl|tetNig1|chr9 (5138081-5138325) | |
| 1110-1343, gnl|xenTro1|scaffold_73 (1863778-1864010) | |
| 1499-1850, gnl|bosTau2|chr25 (34631444-34631794) | |
| 1499-1850, gnl|Hg17|chr7 (98947872-98947520) | |
| 1499-1850, gnl|Mm7|chr5 (136812369-136812049) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-156, gnl|bosTau2|chr25 (34516041-34516178) | |
| 19-156, gnl|Hg17|chr7 (99062227-99062362) | |
| 19-156, gnl|Mm7|chr5 (136839573-136839444) | |
| 303-403, gnl|bosTau2|chr25 (34662979-34663079) | |
| 303-403, gnl|canFam2|chr6 (12867847-12868082) | |
| 303-403, gnl|dasNov1|scaffold_36563 (3465-3715) | |
| 303-403, gnl|echTel1|scaffold_262799 (3731-3476) | |
| 303-403, gnl|hg17|chr7 (4316474-4316729) | |
| 303-403, gnl|Hg17|chr7 (98914954-98914854) | |
| 303-403, gnl|loxAfr1|scaffold_73906 (4950-4693) | |
| 303-403, gnl|mm7|chr5 (136833554-136833822) | |
| 303-403, gnl|Mm7|chr5 (136833676-136833576) | |
| 303-403, gnl|panTro1|chr6 (4712549-4712804) | |
| 303-403, gnl|rheMac2|chr3 (42505104-42505397) | |
| 303-403, gnl|rn3|chr12 (17159344-17159076) | |
| 406-517, gnl|bosTau2|chr25 (34666328-34666439) | |
| 406-517, gnl|canFam2|chr6 (12750037-12750173) | |
| 406-517, gnl|danRer3|chr25 (23348941-23348815) | |
| 406-517, gnl|dasNov1|scaffold_36563 (1459-1594) | |
| 406-517, gnl|echTel1|scaffold_262799 (6583-6449) | |
| 406-517, gnl|fr1|chrUn (47037654-47037554) | |
| 406-517, gnl|galGal2|chr14 (6083607-6083718) | |
| 406-517, gnl|hg17|chr7 (98909223-98909357) | |
| 406-517, gnl|Hg17|chr7 (98909337-98909226) | |
| 406-517, gnl|loxAfr1|scaffold_73906 (7619-7486) | |
| 406-517, gnl|mm7|chr5 (136829838-136829974) | |
| 406-517, gnl|Mm7|chr5 (136829952-136829841) | |
| 406-517, gnl|monDom2|scaffold_17 (3715523-3715657) | |
| 406-517, gnl|panTro1|chr6 (100662056-100662190) | |
| 406-517, gnl|rheMac2|chr3 (46866034-46866170) | |
| 406-517, gnl|rn3|chr12 (17163311-17163176) | |
| 406-517, gnl|tetNig1|chr9 (5139838-5139953) | |
| 406-517, gnl|xenTro1|scaffold_73 (1906748-1906874) | |
| 607-755, gnl|bosTau2|chr25 (32985209-32985357) | |
| 607-755, gnl|canFam2|chr6 (12858845-12858963) | |
| 607-755, gnl|danRer3|chr25 (23352584-23352466) | |
| 607-755, gnl|dasNov1|scaffold_48899 (9078-9174) | |
| 607-755, gnl|echTel1|scaffold_262799 (8454-8336) | |
| 607-755, gnl|fr1|chrUn (52482514-52482632) | |
| 607-755, gnl|galGal2|chr14 (6048658-6048540) | |
| 607-755, gnl|hg17|chr7 (99010626-99010744) | |
| 607-755, gnl|Hg17|chr7 (99010776-99010628) | |
| 607-755, gnl|loxAfr1|scaffold_21760 (20904-21022) | |
| 607-755, gnl|mm7|chr5 (136827916-136828034) | |
| 607-755, gnl|Mm7|chr5 (136828066-136827918) | |
| 607-755, gnl|monDom2|scaffold_17 (3836362-3836480) | |
| 607-755, gnl|oryCun1|scaffold_95532 (9600-9718) | |
| 607-755, gnl|panTro1|chr6 (100795628-100795746) | |
| 607-755, gnl|rheMac2|chr3 (47037831-47037949) | |
| 607-755, gnl|rn3|chr12 (9135570-9135688) | |
| 607-755, gnl|tetNig1|chr9 (5139119-5139237) | |
| 607-755, gnl|xenTro1|scaffold_73 (1903062-1903180) | |
| 1110-1343, gnl|bosTau2|chr25 (34626524-34626757) | |
| 1110-1343, gnl|canFam2|chr6 (12788905-12789151) | |
| 1110-1343, gnl|danRer3|chr25 (23354364-23354119) | |
| 1110-1343, gnl|dasNov1|scaffold_56184 (6726-6972) | |
| 1110-1343, gnl|echTel1|scaffold_51893 (2114-1865) | |
| 1110-1343, gnl|fr1|chrUn (52475509-52475745) | |
| 1110-1343, gnl|galGal2|chr14 (6080067-6080299) | |
| 1110-1343, gnl|hg17|chr7 (98951296-98951542) | |
| 1110-1343, gnl|Hg17|chr7 (98951537-98951304) | |
| 1110-1343, gnl|loxAfr1|scaffold_21760 (1374-1621) | |
| 1110-1343, gnl|mm7|chr5 (136816787-136817033) | |
| 1110-1343, gnl|Mm7|chr5 (136817028-136816795) | |
| 1110-1343, gnl|monDom2|scaffold_17 (3768485-3768720) | |
| 1110-1343, gnl|oryCun1|scaffold_142799 (13188-12943) | |
| 1110-1343, gnl|panTro1|chr6 (100735071-100735318) | |
| 1110-1343, gnl|rheMac2|chr3 (46907741-46907986) | |
| 1110-1343, gnl|rn3|chr12 (9125838-9126084) | |
| 1110-1343, gnl|tetNig1|chr9 (5138081-5138325) | |
| 1110-1343, gnl|xenTro1|scaffold_73 (1863778-1864010) | |
| 1499-1850, gnl|bosTau2|chr25 (34631444-34631794) | |
| 1499-1850, gnl|Hg17|chr7 (98947872-98947520) | |
| 1499-1850, gnl|Mm7|chr5 (136812369-136812049) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| lun (1.50489) | |
| rec (1.38456) | |
| sin (1.22463) | |
| jej (1.18706) | |
| nje (0.49776) | |
| pan (0.23596) | |
| duo (0.172801) | |
| liv (0.146284) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.50489) | |
| rec (1.38456) | |
| sin (1.22463) | |
| jej (1.18706) | |
| nje (0.49776) | |
| pan (0.23596) | |
| duo (0.172801) | |
| liv (0.146284) |