Non-Coding RNA Search

Ss1.1-rplun0115_a12.5

Sequence:


               
               GATGCATCAGTGAAAAACTAAAAGAGGAGAAAAAGAAGAAAAAAAAGAAGAAGAGGAAAC
ATAGAAAGAGCAGTTCAGAGAGCGATGATGAAGAAAAGAAACATGAAAAATTGAAAAAGG
TACTTTGTAAAGGCTAAATAGTACAAGTGACTCAGTATTCTTTATTTGTAAGGACCTTAG
AAAATTGTCAAGTCCTCTTCCCAGGCTCATTTTTAAAATGAGCAAATGAGCCCCAACCTT
GGAAAAGTTGCTGACGTCACCTATCAGGTCTAGAAAATCAACAGAGACTTTGTGTGACTT
GGTGTGCCTGCTTCTTGAACTATTTGTTAAGTGTCACTAATGCACAGAAGAAAAGTGCTT
GGTATAGCTGTTACTTTAGAGCTATTGACATGTTGCCCAGAGAAAGTTGTCTTCTAGCTC
TATAATTCGTGTCAGCAAGTCTGTCTTGAGAAAATTCAGAATTGCATCAGTTGCCAGCTT
CTGTCAGTAAAATGTACATCAGTTTTTGTTGTTAAATAAAATTTCTTTAACATTGAAAAT
GTCATGGAATGTTTTGTGCTTTATGAAAATATATGAGTCAAATAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCATCAGTGAAAAACTAAAAGAGGAGAAAAAGAAGAAAAAAAAGAAGAAGAGGAAAC
ATAGAAAGAGCAGTTCAGAGAGCGATGATGAAGAAAAGAAACATGAAAAATTGAAAAAGG
TACTTTGTAAAGGCTAAATAGTACAAGTGACTCAGTATTCTTTATTTGTAAGGACCTTAG
AAAATTGTCAAGTCCTCTTCCCAGGCTCATTTTTAAAATGAGCAAATGAGCCCCAACCTT
GGAAAAGTTGCTGACGTCACCTATCAGGTCTAGAAAATCAACAGAGACTTTGTGTGACTT
GGTGTGCCTGCTTCTTGAACTATTTGTTAAGTGTCACTAATGCACAGAAGAAAAGTGCTT
GGTATAGCTGTTACTTTAGAGCTATTGACATGTTGCCCAGAGAAAGTTGTCTTCTAGCTC
TATAATTCGTGTCAGCAAGTCTGTCTTGAGAAAATTCAGAATTGCATCAGTTGCCAGCTT
CTGTCAGTAAAATGTACATCAGTTTTTGTTGTTAAATAAAATTTCTTTAACATTGAAAAT
GTCATGGAATGTTTTGTGCTTTATGAAAATATATGAGTCAAATAGTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               163-272, - strand, RNAz p=0.966784

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-272, - strand, RNAz p=0.966784

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-588, gnl|bosTau2|chr7 (48901356-48901964)
               

               
               1-588, gnl|Hg17|chr5 (159764142-159763217)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr7 (48901356-48901964)
               

               
               1-588, gnl|Hg17|chr5 (159764142-159763217)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               lun (0.150489)

	1-588, gnl\|bosTau2\|chr7 (48901356-48901964)
	1-588, gnl\|Hg17\|chr5 (159764142-159763217)