Non-Coding RNA Search

Ss1.1-rplun0115_b10.5

Sequence:


               
               CATTCATCTGTAACCGTGAATAATTATGGACCATACAAACCAATATTTATTGAACTTTAA
AGGCTACTATTTTCAACGATTTCTAGCTGAGACTGACATTCTAGAAAATCTAGCTGATTT
TGAAATTCGTGATGATGATGTCTTCATAATTACATACCCCAAATCTGGTACCATCTGGGC
TCAGCAGATATTAAGCTTGATTTATTTTGAAGGACATCGTACCAGAACTGAAATGGTGGA
AATATATCATAGAGTCCTTTTCCTTGAATACAATCCAGAAAAAGTGGACTATGTCAAGAG
ACCATCTCCTCGCCTCTTCTCTTCCCACCTCCCCTATTATTTAGCACCAAAAGGTCTCAA
GAACAAAAAGCCTAAAGTTATTTACATCTATAGAAACCCCAAGGATGTTTTGATCTCATA
TTTTCATTTTTCAAATTGGTTGCTTACATTAGAACCTTCAGATGACATCGAACATTTCAT
GGAAAAGTTTCTAGATGGGAAAGTGTTTGGAAGTCTCTGGTTTGATCACATCCGAGGCTG
GTATGAGCACAGACATGACTTCAATATTCTGTTCATGATGTATGAGGAGATGAAGAAGGA
TCTCCGAAGTTCTGTGCTGAAAATCAGTAGTTTTCTTGAAAAAGAGTTGAGTGAAGAGGA
TCTGGATGCTGTCGTCAACCAGGCTACATTTGAAAACATGAAGCTTGATCCTCAAGCAGA
TCTCGATCATTTGCTAAACTCTGCAAACTGTACAAGAACAAAGGATGGACATTTTCTGCG
CAAAGGTACCATTGGAGACTGGAAGAATCACCTGACTGTGGCACAAAATGAAAGATTTGA
CAGAATATTCCAAAAGAAGATGAGAGATTTTCCCTTGAAGTTCATCTGGGATATAGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCATCTGTAACCGTGAATAATTATGGACCATACAAACCAATATTTATTGAACTTTAA
AGGCTACTATTTTCAACGATTTCTAGCTGAGACTGACATTCTAGAAAATCTAGCTGATTT
TGAAATTCGTGATGATGATGTCTTCATAATTACATACCCCAAATCTGGTACCATCTGGGC
TCAGCAGATATTAAGCTTGATTTATTTTGAAGGACATCGTACCAGAACTGAAATGGTGGA
AATATATCATAGAGTCCTTTTCCTTGAATACAATCCAGAAAAAGTGGACTATGTCAAGAG
ACCATCTCCTCGCCTCTTCTCTTCCCACCTCCCCTATTATTTAGCACCAAAAGGTCTCAA
GAACAAAAAGCCTAAAGTTATTTACATCTATAGAAACCCCAAGGATGTTTTGATCTCATA
TTTTCATTTTTCAAATTGGTTGCTTACATTAGAACCTTCAGATGACATCGAACATTTCAT
GGAAAAGTTTCTAGATGGGAAAGTGTTTGGAAGTCTCTGGTTTGATCACATCCGAGGCTG
GTATGAGCACAGACATGACTTCAATATTCTGTTCATGATGTATGAGGAGATGAAGAAGGA
TCTCCGAAGTTCTGTGCTGAAAATCAGTAGTTTTCTTGAAAAAGAGTTGAGTGAAGAGGA
TCTGGATGCTGTCGTCAACCAGGCTACATTTGAAAACATGAAGCTTGATCCTCAAGCAGA
TCTCGATCATTTGCTAAACTCTGCAAACTGTACAAGAACAAAGGATGGACATTTTCTGCG
CAAAGGTACCATTGGAGACTGGAAGAATCACCTGACTGTGGCACAAAATGAAAGATTTGA
CAGAATATTCCAAAAGAAGATGAGAGATTTTCCCTTGAAGTTCATCTGGGATATAGATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7434976|pir||JW0078

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7434976|pir||JW0078

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               167-393, gnl|bosTau2|chr9 (16837160-16837386)
               

               
               167-393, gnl|canFam2|chr1 (60087014-60086807)
               

               
               167-393, gnl|dasNov1|scaffold_24053 (939-743)
               

               
               167-393, gnl|echTel1|scaffold_221700 (2383-2588)
               

               
               167-393, gnl|hg17|chr14 (33956210-33956417)
               

               
               167-393, gnl|Hg17|chr14 (33956413-33956207)
               

               
               167-393, gnl|loxAfr1|scaffold_10627 (10344-10139)
               

               
               167-393, gnl|mm7|chr10 (33560276-33560483)
               

               
               167-393, gnl|Mm7|chr10 (33560484-33560262)
               

               
               167-393, gnl|oryCun1|scaffold_157959 (8884-9091)
               

               
               167-393, gnl|panTro1|chr15 (33097375-33097582)
               

               
               167-393, gnl|rheMac2|chr7 (97345065-97345272)
               


               
               597-787, gnl|bosTau2|chr9 (16854536-16854349)
               

               
               597-787, gnl|Hg17|chr14 (33955988-33955805)
               

               
               597-787, gnl|Mm7|chr10 (33657925-33658115)
               


               
               792-900, gnl|bosTau2|chr9 (17109292-17109399)
               

               
               792-900, gnl|Hg17|chr14 (33955797-33955666)
               

               
               792-900, gnl|Mm7|chr10 (33597554-33597447)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-393, gnl|bosTau2|chr9 (16837160-16837386)
               

               
               167-393, gnl|canFam2|chr1 (60087014-60086807)
               

               
               167-393, gnl|dasNov1|scaffold_24053 (939-743)
               

               
               167-393, gnl|echTel1|scaffold_221700 (2383-2588)
               

               
               167-393, gnl|hg17|chr14 (33956210-33956417)
               

               
               167-393, gnl|Hg17|chr14 (33956413-33956207)
               

               
               167-393, gnl|loxAfr1|scaffold_10627 (10344-10139)
               

               
               167-393, gnl|mm7|chr10 (33560276-33560483)
               

               
               167-393, gnl|Mm7|chr10 (33560484-33560262)
               

               
               167-393, gnl|oryCun1|scaffold_157959 (8884-9091)
               

               
               167-393, gnl|panTro1|chr15 (33097375-33097582)
               

               
               167-393, gnl|rheMac2|chr7 (97345065-97345272)
               


               
               597-787, gnl|bosTau2|chr9 (16854536-16854349)
               

               
               597-787, gnl|Hg17|chr14 (33955988-33955805)
               

               
               597-787, gnl|Mm7|chr10 (33657925-33658115)
               


               
               792-900, gnl|bosTau2|chr9 (17109292-17109399)
               

               
               792-900, gnl|Hg17|chr14 (33955797-33955666)
               

               
               792-900, gnl|Mm7|chr10 (33597554-33597447)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (2.40783)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.40783)

	167-393, gnl\|bosTau2\|chr9 (16837160-16837386)
	167-393, gnl\|canFam2\|chr1 (60087014-60086807)
	167-393, gnl\|dasNov1\|scaffold_24053 (939-743)
	167-393, gnl\|echTel1\|scaffold_221700 (2383-2588)
	167-393, gnl\|hg17\|chr14 (33956210-33956417)
	167-393, gnl\|Hg17\|chr14 (33956413-33956207)
	167-393, gnl\|loxAfr1\|scaffold_10627 (10344-10139)
	167-393, gnl\|mm7\|chr10 (33560276-33560483)
	167-393, gnl\|Mm7\|chr10 (33560484-33560262)
	167-393, gnl\|oryCun1\|scaffold_157959 (8884-9091)
	167-393, gnl\|panTro1\|chr15 (33097375-33097582)
	167-393, gnl\|rheMac2\|chr7 (97345065-97345272)

	597-787, gnl\|bosTau2\|chr9 (16854536-16854349)
	597-787, gnl\|Hg17\|chr14 (33955988-33955805)
	597-787, gnl\|Mm7\|chr10 (33657925-33658115)

	792-900, gnl\|bosTau2\|chr9 (17109292-17109399)
	792-900, gnl\|Hg17\|chr14 (33955797-33955666)
	792-900, gnl\|Mm7\|chr10 (33597554-33597447)