Non-Coding RNA Search

Ss1.1-rplun0115_o24.5

Sequence:


               
               GGCCTCAGAAGAGGAGGGATGTATTGGATCAGACGAGATGAGCTCCAGTTTCCTCTGTAG
TTCTAAATTTTATGACTCTAAACCCAACATTTTAAAGTTATATGAATGAAAACATTATCA
GCTTATCTCCTAATGTAAATATATAGCTAAAATATTGGAGAAAAATTCATGGCCCTACAG
AATTCATTCTGCTGTTAATCTGGACCATCTGCTGTGAATTCCTCTTGTCTACTTTGTTCC
TTACCTCTTTAGGCCACTGTGCACTGTGGACCACAAGTGAAGTTATGTCGCTTAGTGCTA
AGTGATACACTGCTGCTTTGAAAGAGTCAGGGCTCTTGAAGGCCCCAGAAAGCAAACAAG
CCTTGGGCTAATCTGGCTGAGTAGTCAGTTGCTTATAAAAGCATAACTGCCTTATATTTT
GGATTATTTTTTTTTATTGGGAGTGGGGGGAGGGGGAGTTGCATACAAAGATAATATACA
TATATATCCAAGTTTCTGAAATGAAATAGTTTTTAGATTACTTTTTCAGCTGTAAATAAT
GTACATTTAATTCCACGAGAAAAATTGTTTTCTGCAAATTTTCTAGGTATAGCAAAAAGA
AATTTTTGTAGATGAAAAAAATCATTATGTTTAGAGGTCTAATGTTATATGTTTTCGTAT
TACAGAGTGAATTTGTATTTAAACAAAAATTTAAATTTTGGAATCCTCTAAACGTTTTTG
TATCTTTAATTGGTTTATTATTAAATAAATCATGTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCAGAAGAGGAGGGATGTATTGGATCAGACGAGATGAGCTCCAGTTTCCTCTGTAG
TTCTAAATTTTATGACTCTAAACCCAACATTTTAAAGTTATATGAATGAAAACATTATCA
GCTTATCTCCTAATGTAAATATATAGCTAAAATATTGGAGAAAAATTCATGGCCCTACAG
AATTCATTCTGCTGTTAATCTGGACCATCTGCTGTGAATTCCTCTTGTCTACTTTGTTCC
TTACCTCTTTAGGCCACTGTGCACTGTGGACCACAAGTGAAGTTATGTCGCTTAGTGCTA
AGTGATACACTGCTGCTTTGAAAGAGTCAGGGCTCTTGAAGGCCCCAGAAAGCAAACAAG
CCTTGGGCTAATCTGGCTGAGTAGTCAGTTGCTTATAAAAGCATAACTGCCTTATATTTT
GGATTATTTTTTTTTATTGGGAGTGGGGGGAGGGGGAGTTGCATACAAAGATAATATACA
TATATATCCAAGTTTCTGAAATGAAATAGTTTTTAGATTACTTTTTCAGCTGTAAATAAT
GTACATTTAATTCCACGAGAAAAATTGTTTTCTGCAAATTTTCTAGGTATAGCAAAAAGA
AATTTTTGTAGATGAAAAAAATCATTATGTTTAGAGGTCTAATGTTATATGTTTTCGTAT
TACAGAGTGAATTTGTATTTAAACAAAAATTTAAATTTTGGAATCCTCTAAACGTTTTTG
TATCTTTAATTGGTTTATTATTAAATAAATCATGTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-393, + strand, RNAz p=0.807252

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-393, + strand, RNAz p=0.807252

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_172373, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_172373, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               85-760, gnl|bosTau2|chr12 (2814564-2813907)
               

               
               85-760, gnl|Hg17|chr13 (40404813-40404170)
               

               
               85-760, gnl|Mm7|chr14 (74262551-74263156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-760, gnl|bosTau2|chr12 (2814564-2813907)
               

               
               85-760, gnl|Hg17|chr13 (40404813-40404170)
               

               
               85-760, gnl|Mm7|chr14 (74262551-74263156)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	85-760, gnl\|bosTau2\|chr12 (2814564-2813907)
	85-760, gnl\|Hg17\|chr13 (40404813-40404170)
	85-760, gnl\|Mm7\|chr14 (74262551-74263156)

	rec (0.17307)
	cut (0.169924)
	lun (0.150489)
	lnt (0.142308)
	med (0.116252)