Non-Coding RNA Search

Ss1.1-rplun0117_b5.5

Sequence:


               
               GCTAATGGAAGTGCTAAGAAAGCTGGTGGGGACTGTAAGCCTGCTTTCCCCTCCTTACCT
GCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGAAAAGCAGTTCTCTGCCTTCTTCT
AGTGGTGACAGCTCTAACTTCCCTAATCCACCTGCTACTAAACCATCGGTTCCTTCTAAC
CCTCTCAGCCCCCAAACAGGACGATCTGCTCCCTCTGCCTCCCTCATCCCCTCTGTCTCT
AATGGCTCCTTAAAGTTTCAGAGCCCCACGCATACAGGTAAAGGTCACCCTCTCTCATTC
TCACTGCAGACTCAAAATGGCCGAGCAGCCCCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAATGGAAGTGCTAAGAAAGCTGGTGGGGACTGTAAGCCTGCTTTCCCCTCCTTACCT
GCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGAAAAGCAGTTCTCTGCCTTCTTCT
AGTGGTGACAGCTCTAACTTCCCTAATCCACCTGCTACTAAACCATCGGTTCCTTCTAAC
CCTCTCAGCCCCCAAACAGGACGATCTGCTCCCTCTGCCTCCCTCATCCCCTCTGTCTCT
AATGGCTCCTTAAAGTTTCAGAGCCCCACGCATACAGGTAAAGGTCACCCTCTCTCATTC
TCACTGCAGACTCAAAATGGCCGAGCAGCCCCCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55633567|ref|XP_507698.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633567|ref|XP_507698.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.975712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.975712

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-336, gnl|bosTau2|chr13 (11811777-11811442)
               

               
               1-336, gnl|Hg17|chr10 (24874762-24875097)
               

               
               1-336, gnl|Mm7|chr2 (20873869-20874207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr13 (11811777-11811442)
               

               
               1-336, gnl|Hg17|chr10 (24874762-24875097)
               

               
               1-336, gnl|Mm7|chr2 (20873869-20874207)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.170503)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

	1-336, gnl\|bosTau2\|chr13 (11811777-11811442)
	1-336, gnl\|Hg17\|chr10 (24874762-24875097)
	1-336, gnl\|Mm7\|chr2 (20873869-20874207)

	eye (0.170503)
	lun (0.150489)
	cst (0.140036)
	ssp (0.13552)
	ova (0.129132)
	ldo (0.0970026)