Non-Coding RNA Search

Ss1.1-rplun0117_e4.5

Sequence:


               
               CATTCATGTGGTTCACTTTTCATGGNCAGACCTTGCTGGAAAATGGCACTCAACAGCACC
AGTTAGGGGTCTGGCCCCTTCTGCCTNGATCATTTAAAACTCTTGAAATGAAGACATCAA
AAGCTGGCTGGTGGCTCCTAGACACAGAAGTCGGAGAAAACCAGAGAGCAGGGATGCAAA
CACCATTTCTCATCATAGACAGAGAATGTAAGATGCCAATGGGACTAAGCACTGGTCTCA
TAGCTGATTCACAGATCAAGGCTTCTGAGTTTTGGGGACATTGGCAACCAAAATTAGCAA
GATTAAACAATGGTGGATCATATAATGCTTGGATTACAGATAAATTTTCAGGAGAATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCATGTGGTTCACTTTTCATGGNCAGACCTTGCTGGAAAATGGCACTCAACAGCACC
AGTTAGGGGTCTGGCCCCTTCTGCCTNGATCATTTAAAACTCTTGAAATGAAGACATCAA
AAGCTGGCTGGTGGCTCCTAGACACAGAAGTCGGAGAAAACCAGAGAGCAGGGATGCAAA
CACCATTTCTCATCATAGACAGAGAATGTAAGATGCCAATGGGACTAAGCACTGGTCTCA
TAGCTGATTCACAGATCAAGGCTTCTGAGTTTTGGGGACATTGGCAACCAAAATTAGCAA
GATTAAACAATGGTGGATCATATAATGCTTGGATTACAGATAAATTTTCAGGAGAATCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-204, - strand, RNAz p=0.649011

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-204, - strand, RNAz p=0.649011

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               90-204, gnl|bosTau2|chr16 (24945096-24944982)
               

               
               90-204, gnl|canFam2|chr7 (32023738-32023613)
               

               
               90-204, gnl|danRer3|chr9 (30918620-30918496)
               

               
               90-204, gnl|dasNov1|scaffold_26388 (9664-9539)
               

               
               90-204, gnl|echTel1|scaffold_285704 (6061-6186)
               

               
               90-204, gnl|fr1|chrUn (227046868-227046743)
               

               
               90-204, gnl|galGal2|chr1 (77717935-77717811)
               

               
               90-204, gnl|hg17|chr1 (166226795-166226920)
               

               
               90-204, gnl|Hg17|chr1 (166226911-166226797)
               

               
               90-204, gnl|mm7|chr1 (164173668-164173543)
               

               
               90-204, gnl|Mm7|chr1 (164173550-164173664)
               

               
               90-204, gnl|monDom2|scaffold_16 (20608673-20608798)
               

               
               90-204, gnl|oryCun1|scaffold_204133 (375-250)
               

               
               90-204, gnl|panTro1|chr1 (148494509-148494634)
               

               
               90-204, gnl|rheMac2|chr1 (199231100-199231225)
               

               
               90-204, gnl|rn3|chr13 (79999244-79999114)
               

               
               90-204, gnl|tetNig1|chr2 (6554824-6554699)
               

               
               90-204, gnl|xenTro1|scaffold_143 (1777591-1777716)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-204, gnl|bosTau2|chr16 (24945096-24944982)
               

               
               90-204, gnl|canFam2|chr7 (32023738-32023613)
               

               
               90-204, gnl|danRer3|chr9 (30918620-30918496)
               

               
               90-204, gnl|dasNov1|scaffold_26388 (9664-9539)
               

               
               90-204, gnl|echTel1|scaffold_285704 (6061-6186)
               

               
               90-204, gnl|fr1|chrUn (227046868-227046743)
               

               
               90-204, gnl|galGal2|chr1 (77717935-77717811)
               

               
               90-204, gnl|hg17|chr1 (166226795-166226920)
               

               
               90-204, gnl|Hg17|chr1 (166226911-166226797)
               

               
               90-204, gnl|mm7|chr1 (164173668-164173543)
               

               
               90-204, gnl|Mm7|chr1 (164173550-164173664)
               

               
               90-204, gnl|monDom2|scaffold_16 (20608673-20608798)
               

               
               90-204, gnl|oryCun1|scaffold_204133 (375-250)
               

               
               90-204, gnl|panTro1|chr1 (148494509-148494634)
               

               
               90-204, gnl|rheMac2|chr1 (199231100-199231225)
               

               
               90-204, gnl|rn3|chr13 (79999244-79999114)
               

               
               90-204, gnl|tetNig1|chr2 (6554824-6554699)
               

               
               90-204, gnl|xenTro1|scaffold_143 (1777591-1777716)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.300978)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)

	90-204, gnl\|bosTau2\|chr16 (24945096-24944982)
	90-204, gnl\|canFam2\|chr7 (32023738-32023613)
	90-204, gnl\|danRer3\|chr9 (30918620-30918496)
	90-204, gnl\|dasNov1\|scaffold_26388 (9664-9539)
	90-204, gnl\|echTel1\|scaffold_285704 (6061-6186)
	90-204, gnl\|fr1\|chrUn (227046868-227046743)
	90-204, gnl\|galGal2\|chr1 (77717935-77717811)
	90-204, gnl\|hg17\|chr1 (166226795-166226920)
	90-204, gnl\|Hg17\|chr1 (166226911-166226797)
	90-204, gnl\|mm7\|chr1 (164173668-164173543)
	90-204, gnl\|Mm7\|chr1 (164173550-164173664)
	90-204, gnl\|monDom2\|scaffold_16 (20608673-20608798)
	90-204, gnl\|oryCun1\|scaffold_204133 (375-250)
	90-204, gnl\|panTro1\|chr1 (148494509-148494634)
	90-204, gnl\|rheMac2\|chr1 (199231100-199231225)
	90-204, gnl\|rn3\|chr13 (79999244-79999114)
	90-204, gnl\|tetNig1\|chr2 (6554824-6554699)
	90-204, gnl\|xenTro1\|scaffold_143 (1777591-1777716)