Ss1.1-rplun0124_b8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGGTTGAATTTACCATCCCACTGAGAGAGAATTGGGCGCTGCCATTCTTTGCAATTC AGATAGCAGCAATTACCTATTTCCTGAGGCCAAACTTGCAGCCTCTTTCTCAAAGGCTGA CACTTCTTGCCATTTTCACATCAACTTTTCTCTTTAGTCTGACATGGCAGTTTAATCAGT TTATGATGCTGATGCAGGCATTAGTGCTGTTCACACTGGATTCCTTGGACATGCTGCCAG CAGTAAAGGTGACATGGCTCTATGGTATTCAGCTAACAGGTTTGCTCCTGGTCTGCATTC TTCAATTTTTTAATTCCATGATTCTGGGATCATTGCTTATCAGTTTCAACCTATCGGTAT TAATTGCAAGAAAAATTCAGAAAAATCTGAAAACTGGAAGCTTCCTTAATAGGCTTGGAA AACTGTTGTTACATTTATTTGTGGTTTTATGTTTGACACTTTTTCTCAACAACATTATTA AGAGAATTCTTAACCTCAAGTCAGATGAACACATATTTAAATTTCTGAAGGCAAAATTTG GGTTTGGAGCAACAAGAGATTTTGATGCAAACCTCTATCTGTGTGAAGAAGCATTTGGCC TTCTGCCTCTTAATACATTTGAAAGGCTTTCCGATACTCTGCTTTTTTATGCTTATATAT TTGTTCTGTCCATCACGGTGACTGCAGCATTAGCTGTTGCCTTCCGTAATCTCAGTGATT CTACAAATCAGCAATCCATGGGTAAAATAGGAAAGTCCTCAATCGGCCTGAAACCAGAAA CTGCCTACAACTTAATACATACCATTCTGTTTGGATTCTTGGCATTGAGTACCATGAGAA TGAAGTACCTCTGGACATCACACATGTGTGTCTTTGCATCATTTGGCTTATGCAGCCCTG AAATATGGGAGTTACTTCTGAAGTTGATCCATCTTTATAACCCAAAGAGGATATGTATAA TGCGATATTCAATACCGATACTAATACTGCTGTATCTGTGCTATAAGTTTTATGGCTGTA CATGTGGCATATGAAAATTCCCGGGCCCCAGACAGACTCTGAGCTACAGCTGTGACCTGT GCTACGGCCGTGGCTGCGCCGGATCCTTTTAACTCCTCGCCGTGGTTGGATTCTTAACCC ACTGTGCCATGGTGGGAACTCCTTGGTATATATTTAGATGATCAAGTCTCTTGAGCCAAA TGCCATCTGATGAAACAATTAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGGTTGAATTTACCATCCCACTGAGAGAGAATTGGGCGCTGCCATTCTTTGCAATTC AGATAGCAGCAATTACCTATTTCCTGAGGCCAAACTTGCAGCCTCTTTCTCAAAGGCTGA CACTTCTTGCCATTTTCACATCAACTTTTCTCTTTAGTCTGACATGGCAGTTTAATCAGT TTATGATGCTGATGCAGGCATTAGTGCTGTTCACACTGGATTCCTTGGACATGCTGCCAG CAGTAAAGGTGACATGGCTCTATGGTATTCAGCTAACAGGTTTGCTCCTGGTCTGCATTC TTCAATTTTTTAATTCCATGATTCTGGGATCATTGCTTATCAGTTTCAACCTATCGGTAT TAATTGCAAGAAAAATTCAGAAAAATCTGAAAACTGGAAGCTTCCTTAATAGGCTTGGAA AACTGTTGTTACATTTATTTGTGGTTTTATGTTTGACACTTTTTCTCAACAACATTATTA AGAGAATTCTTAACCTCAAGTCAGATGAACACATATTTAAATTTCTGAAGGCAAAATTTG GGTTTGGAGCAACAAGAGATTTTGATGCAAACCTCTATCTGTGTGAAGAAGCATTTGGCC TTCTGCCTCTTAATACATTTGAAAGGCTTTCCGATACTCTGCTTTTTTATGCTTATATAT TTGTTCTGTCCATCACGGTGACTGCAGCATTAGCTGTTGCCTTCCGTAATCTCAGTGATT CTACAAATCAGCAATCCATGGGTAAAATAGGAAAGTCCTCAATCGGCCTGAAACCAGAAA CTGCCTACAACTTAATACATACCATTCTGTTTGGATTCTTGGCATTGAGTACCATGAGAA TGAAGTACCTCTGGACATCACACATGTGTGTCTTTGCATCATTTGGCTTATGCAGCCCTG AAATATGGGAGTTACTTCTGAAGTTGATCCATCTTTATAACCCAAAGAGGATATGTATAA TGCGATATTCAATACCGATACTAATACTGCTGTATCTGTGCTATAAGTTTTATGGCTGTA CATGTGGCATATGAAAATTCCCGGGCCCCAGACAGACTCTGAGCTACAGCTGTGACCTGT GCTACGGCCGTGGCTGCGCCGGATCCTTTTAACTCCTCGCCGTGGTTGGATTCTTAACCC ACTGTGCCATGGTGGGAACTCCTTGGTATATATTTAGATGATCAAGTCTCTTGAGCCAAA TGCCATCTGATGAAACAATTAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 555-713, + strand, RNAz p=0.886967 | |
| 837-950, + strand, RNAz p=0.695455 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 555-713, + strand, RNAz p=0.886967 | |
| 837-950, + strand, RNAz p=0.695455 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 104-250, gnl|bosTau2|chr18 (35596625-35596478) | |
| 104-250, gnl|Hg17|chr19 (37622511-37622658) | |
| 104-250, gnl|Mm7|chr7 (32611989-32611837) | |
| 373-482, gnl|bosTau2|chr18 (35583934-35583824) | |
| 373-482, gnl|canFam2|chr1 (122396436-122396307) | |
| 373-482, gnl|dasNov1|scaffold_1775 (13648-13729) | |
| 373-482, gnl|echTel1|scaffold_314857 (10685-10809) | |
| 373-482, gnl|fr1|chrUn (201094998-201095116) | |
| 373-482, gnl|galGal2|chr11 (9985883-9986010) | |
| 373-482, gnl|hg17|chr19 (37637671-37637801) | |
| 373-482, gnl|Hg17|chr19 (37637676-37637786) | |
| 373-482, gnl|loxAfr1|scaffold_1316 (77838-77709) | |
| 373-482, gnl|mm7|chr7 (32604537-32604409) | |
| 373-482, gnl|Mm7|chr7 (32604530-32604420) | |
| 373-482, gnl|monDom2|scaffold_35 (4292164-4292034) | |
| 373-482, gnl|oryCun1|scaffold_189279 (43491-43619) | |
| 373-482, gnl|panTro1|chr20 (34141535-34141665) | |
| 373-482, gnl|rheMac2|chr19 (38970207-38970336) | |
| 373-482, gnl|rn3|chr1 (88344877-88344749) | |
| 555-736, gnl|bosTau2|chr18 (35581448-35581267) | |
| 555-736, gnl|Hg17|chr19 (37641095-37641276) | |
| 555-736, gnl|Mm7|chr7 (32602315-32602148) | |
| 837-950, gnl|bosTau2|chr18 (35577404-35577291) | |
| 837-950, gnl|canFam2|chr1 (122390396-122390299) | |
| 837-950, gnl|dasNov1|scaffold_2199 (85358-85455) | |
| 837-950, gnl|echTel1|scaffold_314857 (19691-19788) | |
| 837-950, gnl|galGal2|chr11 (9988017-9988114) | |
| 837-950, gnl|hg17|chr19 (37646601-37646698) | |
| 837-950, gnl|Hg17|chr19 (37646613-37646726) | |
| 837-950, gnl|loxAfr1|scaffold_1316 (71831-71734) | |
| 837-950, gnl|mm7|chr7 (32598479-32598384) | |
| 837-950, gnl|Mm7|chr7 (32598467-32598354) | |
| 837-950, gnl|monDom2|scaffold_35 (4275280-4275183) | |
| 837-950, gnl|oryCun1|scaffold_189279 (50210-50305) | |
| 837-950, gnl|rheMac2|chr19 (38979120-38979217) | |
| 837-950, gnl|rn3|chr1 (88339772-88339677) | |
| 837-950, gnl|tetNig1|chrUn_random (54197582-54197490) | |
| 837-950, gnl|xenTro1|scaffold_83 (802265-802169) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-250, gnl|bosTau2|chr18 (35596625-35596478) | |
| 104-250, gnl|Hg17|chr19 (37622511-37622658) | |
| 104-250, gnl|Mm7|chr7 (32611989-32611837) | |
| 373-482, gnl|bosTau2|chr18 (35583934-35583824) | |
| 373-482, gnl|canFam2|chr1 (122396436-122396307) | |
| 373-482, gnl|dasNov1|scaffold_1775 (13648-13729) | |
| 373-482, gnl|echTel1|scaffold_314857 (10685-10809) | |
| 373-482, gnl|fr1|chrUn (201094998-201095116) | |
| 373-482, gnl|galGal2|chr11 (9985883-9986010) | |
| 373-482, gnl|hg17|chr19 (37637671-37637801) | |
| 373-482, gnl|Hg17|chr19 (37637676-37637786) | |
| 373-482, gnl|loxAfr1|scaffold_1316 (77838-77709) | |
| 373-482, gnl|mm7|chr7 (32604537-32604409) | |
| 373-482, gnl|Mm7|chr7 (32604530-32604420) | |
| 373-482, gnl|monDom2|scaffold_35 (4292164-4292034) | |
| 373-482, gnl|oryCun1|scaffold_189279 (43491-43619) | |
| 373-482, gnl|panTro1|chr20 (34141535-34141665) | |
| 373-482, gnl|rheMac2|chr19 (38970207-38970336) | |
| 373-482, gnl|rn3|chr1 (88344877-88344749) | |
| 555-736, gnl|bosTau2|chr18 (35581448-35581267) | |
| 555-736, gnl|Hg17|chr19 (37641095-37641276) | |
| 555-736, gnl|Mm7|chr7 (32602315-32602148) | |
| 837-950, gnl|bosTau2|chr18 (35577404-35577291) | |
| 837-950, gnl|canFam2|chr1 (122390396-122390299) | |
| 837-950, gnl|dasNov1|scaffold_2199 (85358-85455) | |
| 837-950, gnl|echTel1|scaffold_314857 (19691-19788) | |
| 837-950, gnl|galGal2|chr11 (9988017-9988114) | |
| 837-950, gnl|hg17|chr19 (37646601-37646698) | |
| 837-950, gnl|Hg17|chr19 (37646613-37646726) | |
| 837-950, gnl|loxAfr1|scaffold_1316 (71831-71734) | |
| 837-950, gnl|mm7|chr7 (32598479-32598384) | |
| 837-950, gnl|Mm7|chr7 (32598467-32598354) | |
| 837-950, gnl|monDom2|scaffold_35 (4275280-4275183) | |
| 837-950, gnl|oryCun1|scaffold_189279 (50210-50305) | |
| 837-950, gnl|rheMac2|chr19 (38979120-38979217) | |
| 837-950, gnl|rn3|chr1 (88339772-88339677) | |
| 837-950, gnl|tetNig1|chrUn_random (54197582-54197490) | |
| 837-950, gnl|xenTro1|scaffold_83 (802265-802169) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.157208) | |
| lun (0.150489) | |
| cty (0.10408) |