Non-Coding RNA Search

Ss1.1-rplun0127_p10.5

Sequence:


               
               TTAAAGTGTCCATATCTCTGGTCCACCCAAGTGAAGGGATCAGAGTCCTTCAGCACCTGC
AAGAAGAGAAACCAGACAGGGTCTATTTCAAGAGTCTATTCCGTTCAGGGAGAATTTCTG
AAACTACTGAGT------------TTCCTGGGAGTCTTCCCCTGTGCAACTTTACAGATC
TCTACACTGGAGAACCCTGGTTCTGCTTCAAACCAAAGAAACTCCCTTGCAGTAGCAGGA
TTAACCACTTCAAAGGTGGATACCTGAAGGGACTCCTGACTGCTGCAGAGAGTGCTTTCT
TCCAGAGTGGTGTCAATATCAAAATGCCAATCAACTCCAGTGGACCTGACTGGGTGACTG
TGATTCCCAGGAGTATAAAAGAAATGAACAGCCTAGAACTATCTCAAGGCTTAGGAACTT
TTCCTTCTGGGTATTATTATAAAGATCAATGGAGGCCCAGAAAGTTTAAAATGCGCCAGT
TTAATGACCCTGACAACATTACAGAATGCTTACAGAGAAAAGTGGTGTATTTATTTGGTG
ACTCGACAATCAGATAATGGTTTGAATATCTCACTA------------ATTTAGTNGAAT
TTAACTTGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGTGTCCATATCTCTGGTCCACCCAAGTGAAGGGATCAGAGTCCTTCAGCACCTGC
AAGAAGAGAAACCAGACAGGGTCTATTTCAAGAGTCTATTCCGTTCAGGGAGAATTTCTG
AAACTACTGAGT------------TTCCTGGGAGTCTTCCCCTGTGCAACTTTACAGATC
TCTACACTGGAGAACCCTGGTTCTGCTTCAAACCAAAGAAACTCCCTTGCAGTAGCAGGA
TTAACCACTTCAAAGGTGGATACCTGAAGGGACTCCTGACTGCTGCAGAGAGTGCTTTCT
TCCAGAGTGGTGTCAATATCAAAATGCCAATCAACTCCAGTGGACCTGACTGGGTGACTG
TGATTCCCAGGAGTATAAAAGAAATGAACAGCCTAGAACTATCTCAAGGCTTAGGAACTT
TTCCTTCTGGGTATTATTATAAAGATCAATGGAGGCCCAGAAAGTTTAAAATGCGCCAGT
TTAATGACCCTGACAACATTACAGAATGCTTACAGAGAAAAGTGGTGTATTTATTTGGTG
ACTCGACAATCAGATAATGGTTTGAATATCTCACTA------------ATTTAGTNGAAT
TTAACTTGGGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33338030|gb|AAQ13637.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33338030|gb|AAQ13637.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-283, - strand, RNAz p=0.990339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-283, - strand, RNAz p=0.990339

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-295, gnl|bosTau2|chr11 (21607828-21607524)
               

               
               3-295, gnl|Hg17|chr3 (103003219-103003523)
               

               
               3-295, gnl|Mm7|chr7 (58532604-58532909)
               


               
               368-571, gnl|bosTau2|chr11 (21591594-21591391)
               

               
               368-571, gnl|Hg17|chr3 (103018327-103018530)
               

               
               368-571, gnl|Mm7|chr16 (55691546-55691343)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-295, gnl|bosTau2|chr11 (21607828-21607524)
               

               
               3-295, gnl|Hg17|chr3 (103003219-103003523)
               

               
               3-295, gnl|Mm7|chr7 (58532604-58532909)
               


               
               368-571, gnl|bosTau2|chr11 (21591594-21591391)
               

               
               368-571, gnl|Hg17|chr3 (103018327-103018530)
               

               
               368-571, gnl|Mm7|chr16 (55691546-55691343)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	3-295, gnl\|bosTau2\|chr11 (21607828-21607524)
	3-295, gnl\|Hg17\|chr3 (103003219-103003523)
	3-295, gnl\|Mm7\|chr7 (58532604-58532909)

	368-571, gnl\|bosTau2\|chr11 (21591594-21591391)
	368-571, gnl\|Hg17\|chr3 (103018327-103018530)
	368-571, gnl\|Mm7\|chr16 (55691546-55691343)