Non-Coding RNA Search

Ss1.1-rplun0128_k5.5

Sequence:


               
               CGCGGTTTCGGCGGCGGAAACATGGCGGCCGTGGCCGGGCCGGTCATGGAGAAAGTTTCC
GACGAGAGGGGCCTGTGCTAGAACGTGCAGCCTCGGGCCCTCGCCTCCCCTGGCGTGTCG
CCTCCCTGCTCCGAGTAGCGGGCTCAGCCTTAAATCTCTCCCTTTTCCGTGTTGGCCCCA
GAGACGACTCCGAGATCGCTATAAACAAATCCCACCCAAGAAAATGCTGAAATAGGAGTT
CAGATACATTGGATTTGCTGGATGAAATACAAGCAGTTAATTTTTGTAAAGTGGGGAGAA
AGCCCAAATTAACAGATTAATGTGTAAATCACTGCGTTATTGCTTTAGTCATTGTCTCTA
TTTAGCAATGACAAGACTGGGAGAAGTAAACAAAGAAGTAAACATGCATTCTTCAGTGCG
TTATCTTGGCTATTTAGCCAGAATCAATTTACTGGTTGCCATATGCCTAGGTCTTTATGT
AAGATGGGAAAAAATAGCAAATTCTTTAATTTTGGTCATTTTTATTCTTGGTCTTTTTGT
TCTTGGAATTGCCAGCATACTCTATTATTATTTTTCAATGGAAGCAGCAAGTTTAAGTCT
CTCCAATCTTTGGTTTGGATTCTTGCTTGGCCTCTTATGTTTTCTTGATAATTCGTCCTT
TAAAAATGACGTGAAAGAAGAATCAACCAAATATTTGCTTCTAACATCCATAGTATTAAG
GATACTCTGCTCTTTGGTGGAGAGAATTTCTGGTTATGTCCGTCATCGACCCACCTTACT
AACCACAGTTGAATTTCTGGAACTTGTTGGCTTTGCCATTGCCAGCACCACGATGTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGTTTCGGCGGCGGAAACATGGCGGCCGTGGCCGGGCCGGTCATGGAGAAAGTTTCC
GACGAGAGGGGCCTGTGCTAGAACGTGCAGCCTCGGGCCCTCGCCTCCCCTGGCGTGTCG
CCTCCCTGCTCCGAGTAGCGGGCTCAGCCTTAAATCTCTCCCTTTTCCGTGTTGGCCCCA
GAGACGACTCCGAGATCGCTATAAACAAATCCCACCCAAGAAAATGCTGAAATAGGAGTT
CAGATACATTGGATTTGCTGGATGAAATACAAGCAGTTAATTTTTGTAAAGTGGGGAGAA
AGCCCAAATTAACAGATTAATGTGTAAATCACTGCGTTATTGCTTTAGTCATTGTCTCTA
TTTAGCAATGACAAGACTGGGAGAAGTAAACAAAGAAGTAAACATGCATTCTTCAGTGCG
TTATCTTGGCTATTTAGCCAGAATCAATTTACTGGTTGCCATATGCCTAGGTCTTTATGT
AAGATGGGAAAAAATAGCAAATTCTTTAATTTTGGTCATTTTTATTCTTGGTCTTTTTGT
TCTTGGAATTGCCAGCATACTCTATTATTATTTTTCAATGGAAGCAGCAAGTTTAAGTCT
CTCCAATCTTTGGTTTGGATTCTTGCTTGGCCTCTTATGTTTTCTTGATAATTCGTCCTT
TAAAAATGACGTGAAAGAAGAATCAACCAAATATTTGCTTCTAACATCCATAGTATTAAG
GATACTCTGCTCTTTGGTGGAGAGAATTTCTGGTTATGTCCGTCATCGACCCACCTTACT
AACCACAGTTGAATTTCTGGAACTTGTTGGCTTTGCCATTGCCAGCACCACGATGTTGGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               193-840, gnl|bosTau2|chr4 (27270441-27271089)
               

               
               193-840, gnl|Hg17|chr7 (112018961-112018311)
               

               
               193-840, gnl|Mm7|chr6 (13544525-13543881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-840, gnl|bosTau2|chr4 (27270441-27271089)
               

               
               193-840, gnl|Hg17|chr7 (112018961-112018311)
               

               
               193-840, gnl|Mm7|chr6 (13544525-13543881)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	193-840, gnl\|bosTau2\|chr4 (27270441-27271089)
	193-840, gnl\|Hg17\|chr7 (112018961-112018311)
	193-840, gnl\|Mm7\|chr6 (13544525-13543881)