Ss1.1-rplun0129_g6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGGGCGTTCCTGCGGCGGCTAGGAGGGCTGGAGACACCTCGGAACCTCTCTTCTCCC CTCTAAAGGCCGGCTTGGAAACCTCAGCCCCGCGTGCTGTTTACAGACGTGCCTGCGACG GCCGCCCCAGAGCTAGAGGCTGCCCTCAGCTGGGAGCCAGCATGTCAGCGGCGGTCTTGG AGAACGGAGGCGGGGGCCGCAAACTCAGCGACTGGGGACAGGAAACAAGCTATATTGAAG ACAGCTCCAGTCAAGATGGTTCCATATCACTGATCTTCTCACTCAAAGAAGAAGTTGGTG CGCTGGCCAAAGTCTTACGTTTATTTGAGGAGAATGGTATAAACCTGACTCACATTGAAT CCCGACCTTCGCGTTTAAAGAAAGATGAGTATGAGTTTTTCACCCACCTGGATAAAGGCA GCATGCCTACTCTGTCAGACATCATCAAGATCTTGAGACATGACATCGGCGCCACCGTGC ACGAGCTCTCCCGGGACAAGAAGAAAGACACAGTGCCCTGGTTCCCCAAAACCATTCAAG AGCTGGACAGATTTGCCAATCAGATTCTCAGCTACGGAGCGGAACTGGATGCGGATCACC CTGGTTTTAAAGATCCTGTGTACCGAACAAGACGGAAGTACTTTGCTGACATTGCCTACA ACTATCGACATGGGCAGCCCATCCCCCGAGTGGAGTACACAGAGGAAGAGAAGAAAACGT GGGGGACGGTGTTCAAGAACCTGAAGTCCTTGTATCAAACCCACGCCTGCTACGAGTACA ATCACATTTTCCCACTTCTGGAAAAGTACTGTGGTTTCTGCGAAGATAATATTCCCCAGC TGGAAGAAGTTTCTCAGTTTCTGCAGTCTTGCACCGGTTTCCGCCTCCGACCTGTGGCCG GCCTGCTTTCGTCTCGGGATTTCCTGGGTGGCCTGGCTTTCCGAGTCTTCCACTGCACTC AGTACATCAGACACGCGTCCAAGCCCATGTATACACCTGAACCTGACATCTGCCATGAGC TGTTGGGACATGTACCCTTGTTTTCAGATCGCAGCTTTGCCCAGTTTTCCCAGGAAATCG GCCTCGCCTCTCTGGGGGCACCTGACGAGTATATTGAGAAACTTGCAACAATTTACTGGT TTACTGTGGAGTTTGGGCTCTGCAAGCAAGAAGACTCCATAAAGGCATATGGTGCTGGGC TCCTGTCATCCTTTGGTGAATTACAGTATTGCTTGTCAGGTGAGCCAAAGCTCCTCACTC TGGAACTGGAGAAGACAGCTGTCCAGGAGTACACAGTCACGGAGTTCCAGCCCGTGTACT ACGTGGCCGAGAGTTTCAGTGATGCCAAGGAGAAAGTGAGGAACTTTGCTGCCACAATTC CTCGGCCCTTCTCAGTTCGTTATGACCCATACACCCAAAGGATTGAGGTCTTGGACAACA CCCAGCAGCTTAAGATTCTGGCTGACTCCATCAACGGTGAAGTTGGAATCCTTTGCAATG CCCTCCAGAAATTAAAGTGAAGCCACGGGCAGAACCTCATCTGTCAGCTTAAGAAGCTAT TGATGGAAATCCAGCTACTTCTTTCATCTGAAAAAATCTGAAAAGCAAACCTTTATTTGA AATGACAGCCTTAAATCCTTTTTAGAACAAGATGGAGGATCAACAAGTAAATCAAAATAA TTAGAAATGACAGCATATTAATACACAGCTCCAAAATATAAGGGTGGATCTTTGGGGGCT CATCTTTGATTTAGAGATGATAATCGCATCCTCTTAATTGAGTTAAAAATCAATAACCTG TCACATTTCATCAGACTTAATTAAAATTTGGGACCTGCCTCATTCAACCTTCCTAAATAC TTCTGTATTTGCTCTAAGAATTCCTAAAGGAGTATATGGGTCACTGAATGGGAAACATGA ATGAATCTATTGGAATTGAAGTTCGGGGCTTAATATAAATCTTAACCTATAAAGGTCATT TTCTATGGCAGGGGACTGTGATTCTAATTACTGCTTTGTTATTTTGCCTGTGTAGATTTT CTTTCATTCAGGAGCCTATTGAAATAGTTATAAATATTAAAGTTCAAAGCATAATATCAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGGGCGTTCCTGCGGCGGCTAGGAGGGCTGGAGACACCTCGGAACCTCTCTTCTCCC CTCTAAAGGCCGGCTTGGAAACCTCAGCCCCGCGTGCTGTTTACAGACGTGCCTGCGACG GCCGCCCCAGAGCTAGAGGCTGCCCTCAGCTGGGAGCCAGCATGTCAGCGGCGGTCTTGG AGAACGGAGGCGGGGGCCGCAAACTCAGCGACTGGGGACAGGAAACAAGCTATATTGAAG ACAGCTCCAGTCAAGATGGTTCCATATCACTGATCTTCTCACTCAAAGAAGAAGTTGGTG CGCTGGCCAAAGTCTTACGTTTATTTGAGGAGAATGGTATAAACCTGACTCACATTGAAT CCCGACCTTCGCGTTTAAAGAAAGATGAGTATGAGTTTTTCACCCACCTGGATAAAGGCA GCATGCCTACTCTGTCAGACATCATCAAGATCTTGAGACATGACATCGGCGCCACCGTGC ACGAGCTCTCCCGGGACAAGAAGAAAGACACAGTGCCCTGGTTCCCCAAAACCATTCAAG AGCTGGACAGATTTGCCAATCAGATTCTCAGCTACGGAGCGGAACTGGATGCGGATCACC CTGGTTTTAAAGATCCTGTGTACCGAACAAGACGGAAGTACTTTGCTGACATTGCCTACA ACTATCGACATGGGCAGCCCATCCCCCGAGTGGAGTACACAGAGGAAGAGAAGAAAACGT GGGGGACGGTGTTCAAGAACCTGAAGTCCTTGTATCAAACCCACGCCTGCTACGAGTACA ATCACATTTTCCCACTTCTGGAAAAGTACTGTGGTTTCTGCGAAGATAATATTCCCCAGC TGGAAGAAGTTTCTCAGTTTCTGCAGTCTTGCACCGGTTTCCGCCTCCGACCTGTGGCCG GCCTGCTTTCGTCTCGGGATTTCCTGGGTGGCCTGGCTTTCCGAGTCTTCCACTGCACTC AGTACATCAGACACGCGTCCAAGCCCATGTATACACCTGAACCTGACATCTGCCATGAGC TGTTGGGACATGTACCCTTGTTTTCAGATCGCAGCTTTGCCCAGTTTTCCCAGGAAATCG GCCTCGCCTCTCTGGGGGCACCTGACGAGTATATTGAGAAACTTGCAACAATTTACTGGT TTACTGTGGAGTTTGGGCTCTGCAAGCAAGAAGACTCCATAAAGGCATATGGTGCTGGGC TCCTGTCATCCTTTGGTGAATTACAGTATTGCTTGTCAGGTGAGCCAAAGCTCCTCACTC TGGAACTGGAGAAGACAGCTGTCCAGGAGTACACAGTCACGGAGTTCCAGCCCGTGTACT ACGTGGCCGAGAGTTTCAGTGATGCCAAGGAGAAAGTGAGGAACTTTGCTGCCACAATTC CTCGGCCCTTCTCAGTTCGTTATGACCCATACACCCAAAGGATTGAGGTCTTGGACAACA CCCAGCAGCTTAAGATTCTGGCTGACTCCATCAACGGTGAAGTTGGAATCCTTTGCAATG CCCTCCAGAAATTAAAGTGAAGCCACGGGCAGAACCTCATCTGTCAGCTTAAGAAGCTAT TGATGGAAATCCAGCTACTTCTTTCATCTGAAAAAATCTGAAAAGCAAACCTTTATTTGA AATGACAGCCTTAAATCCTTTTTAGAACAAGATGGAGGATCAACAAGTAAATCAAAATAA TTAGAAATGACAGCATATTAATACACAGCTCCAAAATATAAGGGTGGATCTTTGGGGGCT CATCTTTGATTTAGAGATGATAATCGCATCCTCTTAATTGAGTTAAAAATCAATAACCTG TCACATTTCATCAGACTTAATTAAAATTTGGGACCTGCCTCATTCAACCTTCCTAAATAC TTCTGTATTTGCTCTAAGAATTCCTAAAGGAGTATATGGGTCACTGAATGGGAAACATGA ATGAATCTATTGGAATTGAAGTTCGGGGCTTAATATAAATCTTAACCTATAAAGGTCATT TTCTATGGCAGGGGACTGTGATTCTAATTACTGCTTTGTTATTTTGCCTGTGTAGATTTT CTTTCATTCAGGAGCCTATTGAAATAGTTATAAATATTAAAGTTCAAAGCATAATATCAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 328-513, gnl|bosTau2|chr5 (38412313-38412128) | |
| 328-513, gnl|canFam2|chr15 (44656324-44656125) | |
| 328-513, gnl|canFam2|chr15 (44656125-44656324) | |
| 328-513, gnl|danRer3|chrNA (102034260-102034455) | |
| 328-513, gnl|danRer3|chrNA (102034455-102034260) | |
| 328-513, gnl|dasNov1|scaffold_60494 (39953-40152) | |
| 328-513, gnl|dasNov1|scaffold_60494 (40152-39953) | |
| 328-513, gnl|echTel1|scaffold_319217 (48063-48262) | |
| 328-513, gnl|echTel1|scaffold_319217 (48262-48063) | |
| 328-513, gnl|fr1|chrUn (86278424-86278611) | |
| 328-513, gnl|fr1|chrUn (86278611-86278424) | |
| 328-513, gnl|galGal2|chr1 (51790387-51790584) | |
| 328-513, gnl|galGal2|chr1 (51790584-51790387) | |
| 328-513, gnl|hg17|chr12 (101790971-101791170) | |
| 328-513, gnl|Hg17|chr12 (101791165-101790980) | |
| 328-513, gnl|hg17|chr12_random (116306-116505) | |
| 328-513, gnl|loxAfr1|scaffold_18181 (15115-15314) | |
| 328-513, gnl|loxAfr1|scaffold_18181 (15314-15115) | |
| 328-513, gnl|mm7|chr10 (87096348-87096547) | |
| 328-513, gnl|mm7|chr10 (87096547-87096348) | |
| 328-513, gnl|Mm7|chr10 (87096351-87096536) | |
| 328-513, gnl|monDom2|scaffold_34 (10376496-10376695) | |
| 328-513, gnl|monDom2|scaffold_34 (10376695-10376496) | |
| 328-513, gnl|oryCun1|scaffold_209273 (3773-3574) | |
| 328-513, gnl|oryCun1|scaffold_209273 (3574-3773) | |
| 328-513, gnl|panTro1|chr10 (104253853-104253654) | |
| 328-513, gnl|panTro1|chr10 (104253654-104253853) | |
| 328-513, gnl|rheMac2|chr11 (104060003-104059804) | |
| 328-513, gnl|rheMac2|chr11 (104059804-104060003) | |
| 328-513, gnl|rn3|chr7 (24206789-24206988) | |
| 328-513, gnl|rn3|chr7 (24206988-24206789) | |
| 328-513, gnl|tetNig1|chr19 (1017408-1017218) | |
| 328-513, gnl|tetNig1|chr19 (1017218-1017408) | |
| 328-513, gnl|xenTro1|scaffold_434 (263323-263522) | |
| 328-513, gnl|xenTro1|scaffold_434 (263522-263323) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 328-513, gnl|bosTau2|chr5 (38412313-38412128) | |
| 328-513, gnl|canFam2|chr15 (44656324-44656125) | |
| 328-513, gnl|canFam2|chr15 (44656125-44656324) | |
| 328-513, gnl|danRer3|chrNA (102034260-102034455) | |
| 328-513, gnl|danRer3|chrNA (102034455-102034260) | |
| 328-513, gnl|dasNov1|scaffold_60494 (39953-40152) | |
| 328-513, gnl|dasNov1|scaffold_60494 (40152-39953) | |
| 328-513, gnl|echTel1|scaffold_319217 (48063-48262) | |
| 328-513, gnl|echTel1|scaffold_319217 (48262-48063) | |
| 328-513, gnl|fr1|chrUn (86278424-86278611) | |
| 328-513, gnl|fr1|chrUn (86278611-86278424) | |
| 328-513, gnl|galGal2|chr1 (51790387-51790584) | |
| 328-513, gnl|galGal2|chr1 (51790584-51790387) | |
| 328-513, gnl|hg17|chr12 (101790971-101791170) | |
| 328-513, gnl|Hg17|chr12 (101791165-101790980) | |
| 328-513, gnl|hg17|chr12_random (116306-116505) | |
| 328-513, gnl|loxAfr1|scaffold_18181 (15115-15314) | |
| 328-513, gnl|loxAfr1|scaffold_18181 (15314-15115) | |
| 328-513, gnl|mm7|chr10 (87096348-87096547) | |
| 328-513, gnl|mm7|chr10 (87096547-87096348) | |
| 328-513, gnl|Mm7|chr10 (87096351-87096536) | |
| 328-513, gnl|monDom2|scaffold_34 (10376496-10376695) | |
| 328-513, gnl|monDom2|scaffold_34 (10376695-10376496) | |
| 328-513, gnl|oryCun1|scaffold_209273 (3773-3574) | |
| 328-513, gnl|oryCun1|scaffold_209273 (3574-3773) | |
| 328-513, gnl|panTro1|chr10 (104253853-104253654) | |
| 328-513, gnl|panTro1|chr10 (104253654-104253853) | |
| 328-513, gnl|rheMac2|chr11 (104060003-104059804) | |
| 328-513, gnl|rheMac2|chr11 (104059804-104060003) | |
| 328-513, gnl|rn3|chr7 (24206789-24206988) | |
| 328-513, gnl|rn3|chr7 (24206988-24206789) | |
| 328-513, gnl|tetNig1|chr19 (1017408-1017218) | |
| 328-513, gnl|tetNig1|chr19 (1017218-1017408) | |
| 328-513, gnl|xenTro1|scaffold_434 (263323-263522) | |
| 328-513, gnl|xenTro1|scaffold_434 (263522-263323) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| lun (5.86907) | |
| mgm (1.98377) | |
| mgp (1.1534) | |
| kid (0.648677) | |
| cli (0.611247) | |
| ski (0.586941) | |
| mga (0.480615) | |
| fli (0.405762) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| eli (0.151814) | |
| liv (0.146284) | |
| csk (0.140746) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (5.86907) | |
| mgm (1.98377) | |
| mgp (1.1534) | |
| kid (0.648677) | |
| cli (0.611247) | |
| ski (0.586941) | |
| mga (0.480615) | |
| fli (0.405762) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| eli (0.151814) | |
| liv (0.146284) | |
| csk (0.140746) | |
| spc (0.113366) |