Non-Coding RNA Search

Ss1.1-rplun0130_c23.5

Sequence:


               
               TACATGAAGAATTTTCAGTTTTGGCAAATACATTTTAGAAAAATGCCTAAGCTATGAGAG
TACTAAATTTCCATTTTAAGAATTTAGTAGAGGTTTCCATTTAAACATTCAGTGAAGATG
TTGTGGTCTCCCTAACATGCAGAAAAAAAGACGTTTTCCACAGAAAAGAAACTCACGGAC
TTGGAGAACAGACTTGTAGTTGCCAAGGGGGAGGGGGAGGGAGTGGGATGGACTGGGAAT
TTGGGGTTAATAGATGCAAACTATTGCCTTTGGAATGGATAAGCAATGAGATCCTGCTGT
ATAGCACAGGGAACTATATCTAGTCACTTGTGATGGAACATGATGGAGGATAATGTGAGA
AAAAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTTGCTGTACTTGCTGTACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATGAAGAATTTTCAGTTTTGGCAAATACATTTTAGAAAAATGCCTAAGCTATGAGAG
TACTAAATTTCCATTTTAAGAATTTAGTAGAGGTTTCCATTTAAACATTCAGTGAAGATG
TTGTGGTCTCCCTAACATGCAGAAAAAAAGACGTTTTCCACAGAAAAGAAACTCACGGAC
TTGGAGAACAGACTTGTAGTTGCCAAGGGGGAGGGGGAGGGAGTGGGATGGACTGGGAAT
TTGGGGTTAATAGATGCAAACTATTGCCTTTGGAATGGATAAGCAATGAGATCCTGCTGT
ATAGCACAGGGAACTATATCTAGTCACTTGTGATGGAACATGATGGAGGATAATGTGAGA
AAAAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTTGCTGTACTTGCTGTACAGT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               132-380, gnl|bosTau2|chr14 (20640465-20640717)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-380, gnl|bosTau2|chr14 (20640465-20640717)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	sme (0.305437)
	pan (0.23596)
	cmu (0.186393)
	fty (0.17584)
	duo (0.172801)
	lun (0.150489)
	cst (0.140036)
	che (0.136314)
	ret (0.128733)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)