Non-Coding RNA Search

Ss1.1-rplun0130_e5.5

Sequence:


               
               GAAAATTATTGTCCTCACACATAATTGTTTTTCTAGGAATCCCTTTTGATACCTCTATCA
ATTTATAATTTTTCATGTGAAACATAGTCTCTACATGGTTCATTTAAAAGATAGATTGGT
TGTTTCATACTGATAATGCATTTGACTCTCTTTTGTTATGCATTTTCCTTAGTGATAGGT
TTGATTTCTACTGAATTTGAAAACATTTAAGAGAATAGATTTGTAAATTATTTTAAATGA
CTAACACAGTGTTTTATATTATTTAAATGGAAGGATCTTCTCCACTGAAATTTATATAGT
ATACTAGGGCCTATTTTCTTATAATTGTCACATTTAATATATGAAAGATAAAACACAAAA
ATACTAATTTTTCAGTTAGCAATTTCAAGTTCTTAAAATTATAAGTGGAGATAATTTTAT
ATTCATTGCTTATATTTAAATATAAATCAACCATTAAAACCATGTTCAGAAGCCTTTTTT
CTTTTTAACCAAAAATGGCTTATCCACAAACTCTTATTTTTCCTTTTAGTATGATGAAAC
AATGGTACTATACAATTTTTGGTTTTGTGATATTCAGGCAATTGCAATATCAGCCTTCCA
AAATCAGGTTTTATGCTGTAAATGCCAACAATAGCTTCTCAGTAATGGTGTCCCTAAAGG
GCATTGAAAAAGTTGAGAAAAGAAAATTGAGCAAGTTAATTTGACATATTGCTCACTTTA
GCTCTGGCTGATATGAGTTAAGTAAGAAAGCCCTAGGTTACTCAAAACACTAAGTTTTGT
CTACTTTCAAACTTAATTTTGAAAAGCTGCTCCACAGAACCTGTATTACATGTTTATGAC
TCCATTTTTTCCCCTTCTGTTCCTGATACATTGTTATAGATCCTGAGAAACCTGCAGCTT
TCTTTCTTTTAAAAAGCTCTTATACAGTAATTGGAAATACAAATGGAGAAGAAACTAAAT
TTTATAATATTCATTGGTGACTTTGATTGGAAACGGAAGTAAGATCTAGATAACAATTAC
ATTTTGGAAAAATGACTTCAGCTGGAGCCAGAAGGTTTTCATTTTTATTTAATATGAACA
ATGACTTAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATTATTGTCCTCACACATAATTGTTTTTCTAGGAATCCCTTTTGATACCTCTATCA
ATTTATAATTTTTCATGTGAAACATAGTCTCTACATGGTTCATTTAAAAGATAGATTGGT
TGTTTCATACTGATAATGCATTTGACTCTCTTTTGTTATGCATTTTCCTTAGTGATAGGT
TTGATTTCTACTGAATTTGAAAACATTTAAGAGAATAGATTTGTAAATTATTTTAAATGA
CTAACACAGTGTTTTATATTATTTAAATGGAAGGATCTTCTCCACTGAAATTTATATAGT
ATACTAGGGCCTATTTTCTTATAATTGTCACATTTAATATATGAAAGATAAAACACAAAA
ATACTAATTTTTCAGTTAGCAATTTCAAGTTCTTAAAATTATAAGTGGAGATAATTTTAT
ATTCATTGCTTATATTTAAATATAAATCAACCATTAAAACCATGTTCAGAAGCCTTTTTT
CTTTTTAACCAAAAATGGCTTATCCACAAACTCTTATTTTTCCTTTTAGTATGATGAAAC
AATGGTACTATACAATTTTTGGTTTTGTGATATTCAGGCAATTGCAATATCAGCCTTCCA
AAATCAGGTTTTATGCTGTAAATGCCAACAATAGCTTCTCAGTAATGGTGTCCCTAAAGG
GCATTGAAAAAGTTGAGAAAAGAAAATTGAGCAAGTTAATTTGACATATTGCTCACTTTA
GCTCTGGCTGATATGAGTTAAGTAAGAAAGCCCTAGGTTACTCAAAACACTAAGTTTTGT
CTACTTTCAAACTTAATTTTGAAAAGCTGCTCCACAGAACCTGTATTACATGTTTATGAC
TCCATTTTTTCCCCTTCTGTTCCTGATACATTGTTATAGATCCTGAGAAACCTGCAGCTT
TCTTTCTTTTAAAAAGCTCTTATACAGTAATTGGAAATACAAATGGAGAAGAAACTAAAT
TTTATAATATTCATTGGTGACTTTGATTGGAAACGGAAGTAAGATCTAGATAACAATTAC
ATTTTGGAAAAATGACTTCAGCTGGAGCCAGAAGGTTTTCATTTTTATTTAATATGAACA
ATGACTTAGCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1074, gnl|bosTau2|chr9 (16284885-16283804)
               

               
               1-1074, gnl|Hg17|chr6 (121442822-121441714)
               

               
               1-1074, gnl|Mm7|chr10 (55833793-55832814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1074, gnl|bosTau2|chr9 (16284885-16283804)
               

               
               1-1074, gnl|Hg17|chr6 (121442822-121441714)
               

               
               1-1074, gnl|Mm7|chr10 (55833793-55832814)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)

	1-1074, gnl\|bosTau2\|chr9 (16284885-16283804)
	1-1074, gnl\|Hg17\|chr6 (121442822-121441714)
	1-1074, gnl\|Mm7\|chr10 (55833793-55832814)