Ss1.1-rplun0132_j21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACCCCGATCTTCGAAGTATTAAACATCACTCTGTTTCCCAAAAGTTCTGTGAATTTT TTCACGAAATCTGTGAAAAGGATGAAAGAAAGTCGCCTCACAGATCAACAAAAGCGCCGA GTGGACCTTCTTCAGCTGATGATTAACTCCCAGAATTCCAAAGAAATGGACCCCCATAAA AGTCTGTCCAATGAAGAACTTGTGGCCCAAGGTATTATTTTTATTTTTGCTGGCTACGAG ACCACTAGCAGTGCTCTCTCCCTCCTTGCGTATGAATTGGCCACTCACCCTGATGTCCAG CAGAAGCTGCAGGAGGAGATTGAGGCAACTTTCCCCAATAAGGCACCTCCCACCTACGAT GCCCTGGCACAGATGGAGTATCTTGACATGGTAGTGAATGAAACTCTTAGATTATACCCA ATTGCTGCTAGACTTGAGAGGGCCTGTAAGAAGGATGTGGAAATCCATGGCGTGTTCGTT CCCAAAGGGACCGTGGTGGTGGTGCCAGTCTTCGTGCTTCACAGAGACCCGGACCTCTGG CCAGAGCCTGAGGAGTTCCGTCCTGAAAGGTTCAGTAAGAAGCACAAGGACACCATAAAT CCTTACACTTACCTGCCCTTTGGGACTGGACCCCGCAACTGCATTGGCATGAGGTTTGCC CTCATGAACATGAAACTCGCTCTCGTCAAAGTCCTGCAGAACTTCTCCTTCAAACCTTGT AAAGAAACACAGATCCCCCTGAAATTAACCACGCAAGGGCTTACACAACCGGAAAAACCT GTCGTTCTAAAGATTTTGCCCAGAGATGGGACCGTAAGTGGAGCCTGACTTTCTCTAAGG ACTTGGGCTTTGATGGTCAAGAAAGCTGCATCCCAGAGCACCAGAGATTTATTTACTTCG TGATGAAATCAATAATGAAGATGGGTTTGATCTACTGTACTTGATGGATGACTAGGGATT CTGCACATTCATTTAGCTTCTCAGGGTCTTTGTGGAGTGTTACATACGGGCACTAGTGGA AGCTGGATAAGCAGACACAGCTTATCTGGTTCTCACAGGATGGTCTCCATCCACCCCCAC CTAGTATCACCTCCTCTTCCGGGGTGCTGATCAGAAGGAAAATTTCTCAGCACTTGTATC AACAGACTTTAATGGAAATCAGAAATATAGTGGAGACTGAAGTGGTGAAATTTAGACAAC TGATTTTGTTTTGAATTGTCTCAATATTATGTTGATCCAGTCATTAAACATCTCTTTAAA AAAGTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACCCCGATCTTCGAAGTATTAAACATCACTCTGTTTCCCAAAAGTTCTGTGAATTTT TTCACGAAATCTGTGAAAAGGATGAAAGAAAGTCGCCTCACAGATCAACAAAAGCGCCGA GTGGACCTTCTTCAGCTGATGATTAACTCCCAGAATTCCAAAGAAATGGACCCCCATAAA AGTCTGTCCAATGAAGAACTTGTGGCCCAAGGTATTATTTTTATTTTTGCTGGCTACGAG ACCACTAGCAGTGCTCTCTCCCTCCTTGCGTATGAATTGGCCACTCACCCTGATGTCCAG CAGAAGCTGCAGGAGGAGATTGAGGCAACTTTCCCCAATAAGGCACCTCCCACCTACGAT GCCCTGGCACAGATGGAGTATCTTGACATGGTAGTGAATGAAACTCTTAGATTATACCCA ATTGCTGCTAGACTTGAGAGGGCCTGTAAGAAGGATGTGGAAATCCATGGCGTGTTCGTT CCCAAAGGGACCGTGGTGGTGGTGCCAGTCTTCGTGCTTCACAGAGACCCGGACCTCTGG CCAGAGCCTGAGGAGTTCCGTCCTGAAAGGTTCAGTAAGAAGCACAAGGACACCATAAAT CCTTACACTTACCTGCCCTTTGGGACTGGACCCCGCAACTGCATTGGCATGAGGTTTGCC CTCATGAACATGAAACTCGCTCTCGTCAAAGTCCTGCAGAACTTCTCCTTCAAACCTTGT AAAGAAACACAGATCCCCCTGAAATTAACCACGCAAGGGCTTACACAACCGGAAAAACCT GTCGTTCTAAAGATTTTGCCCAGAGATGGGACCGTAAGTGGAGCCTGACTTTCTCTAAGG ACTTGGGCTTTGATGGTCAAGAAAGCTGCATCCCAGAGCACCAGAGATTTATTTACTTCG TGATGAAATCAATAATGAAGATGGGTTTGATCTACTGTACTTGATGGATGACTAGGGATT CTGCACATTCATTTAGCTTCTCAGGGTCTTTGTGGAGTGTTACATACGGGCACTAGTGGA AGCTGGATAAGCAGACACAGCTTATCTGGTTCTCACAGGATGGTCTCCATCCACCCCCAC CTAGTATCACCTCCTCTTCCGGGGTGCTGATCAGAAGGAAAATTTCTCAGCACTTGTATC AACAGACTTTAATGGAAATCAGAAATATAGTGGAGACTGAAGTGGTGAAATTTAGACAAC TGATTTTGTTTTGAATTGTCTCAATATTATGTTGATCCAGTCATTAAACATCTCTTTAAA AAAGTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-112, gnl|bosTau2|chr25 (32988651-32988762) | |
| 1-112, gnl|canFam2|chr6 (12854918-12855080) | |
| 1-112, gnl|dasNov1|scaffold_48899 (5696-5856) | |
| 1-112, gnl|echTel1|scaffold_262799 (10733-10580) | |
| 1-112, gnl|fr1|chrUn (52482304-52482461) | |
| 1-112, gnl|hg17|chr7 (99009402-99009566) | |
| 1-112, gnl|Hg17|chr7 (99009518-99009407) | |
| 1-112, gnl|loxAfr1|scaffold_21760 (11990-12146) | |
| 1-112, gnl|mm7|chr5 (136825433-136825583) | |
| 1-112, gnl|Mm7|chr5 (136825549-136825438) | |
| 1-112, gnl|monDom2|scaffold_17 (3835682-3835835) | |
| 1-112, gnl|oryCun1|scaffold_95532 (5951-6106) | |
| 1-112, gnl|panTro1|chr6 (100794408-100794568) | |
| 1-112, gnl|rheMac2|chr3 (47036587-47036751) | |
| 1-112, gnl|rn3|chr12 (9133526-9133691) | |
| 1-112, gnl|xenTro1|scaffold_73 (1901945-1902089) | |
| 341-574, gnl|bosTau2|chr25 (34626524-34626757) | |
| 341-574, gnl|canFam2|chr6 (12788905-12789151) | |
| 341-574, gnl|danRer3|chr25 (23354364-23354119) | |
| 341-574, gnl|dasNov1|scaffold_56184 (6726-6972) | |
| 341-574, gnl|echTel1|scaffold_51893 (2114-1865) | |
| 341-574, gnl|fr1|chrUn (52475509-52475745) | |
| 341-574, gnl|galGal2|chr14 (6080067-6080299) | |
| 341-574, gnl|hg17|chr7 (98951296-98951542) | |
| 341-574, gnl|Hg17|chr7 (98951537-98951304) | |
| 341-574, gnl|loxAfr1|scaffold_21760 (1374-1621) | |
| 341-574, gnl|mm7|chr5 (136816787-136817033) | |
| 341-574, gnl|Mm7|chr5 (136817028-136816795) | |
| 341-574, gnl|monDom2|scaffold_17 (3768485-3768720) | |
| 341-574, gnl|oryCun1|scaffold_142799 (13188-12943) | |
| 341-574, gnl|panTro1|chr6 (100735071-100735318) | |
| 341-574, gnl|rheMac2|chr3 (46907741-46907986) | |
| 341-574, gnl|rn3|chr12 (9125838-9126084) | |
| 341-574, gnl|tetNig1|chr9 (5138081-5138325) | |
| 341-574, gnl|xenTro1|scaffold_73 (1863778-1864010) | |
| 728-1266, gnl|bosTau2|chr25 (33002689-33003238) | |
| 728-1266, gnl|Hg17|chr7 (99000507-98999950) | |
| 728-1266, gnl|Mm7|chr5 (136812371-136811866) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-112, gnl|bosTau2|chr25 (32988651-32988762) | |
| 1-112, gnl|canFam2|chr6 (12854918-12855080) | |
| 1-112, gnl|dasNov1|scaffold_48899 (5696-5856) | |
| 1-112, gnl|echTel1|scaffold_262799 (10733-10580) | |
| 1-112, gnl|fr1|chrUn (52482304-52482461) | |
| 1-112, gnl|hg17|chr7 (99009402-99009566) | |
| 1-112, gnl|Hg17|chr7 (99009518-99009407) | |
| 1-112, gnl|loxAfr1|scaffold_21760 (11990-12146) | |
| 1-112, gnl|mm7|chr5 (136825433-136825583) | |
| 1-112, gnl|Mm7|chr5 (136825549-136825438) | |
| 1-112, gnl|monDom2|scaffold_17 (3835682-3835835) | |
| 1-112, gnl|oryCun1|scaffold_95532 (5951-6106) | |
| 1-112, gnl|panTro1|chr6 (100794408-100794568) | |
| 1-112, gnl|rheMac2|chr3 (47036587-47036751) | |
| 1-112, gnl|rn3|chr12 (9133526-9133691) | |
| 1-112, gnl|xenTro1|scaffold_73 (1901945-1902089) | |
| 341-574, gnl|bosTau2|chr25 (34626524-34626757) | |
| 341-574, gnl|canFam2|chr6 (12788905-12789151) | |
| 341-574, gnl|danRer3|chr25 (23354364-23354119) | |
| 341-574, gnl|dasNov1|scaffold_56184 (6726-6972) | |
| 341-574, gnl|echTel1|scaffold_51893 (2114-1865) | |
| 341-574, gnl|fr1|chrUn (52475509-52475745) | |
| 341-574, gnl|galGal2|chr14 (6080067-6080299) | |
| 341-574, gnl|hg17|chr7 (98951296-98951542) | |
| 341-574, gnl|Hg17|chr7 (98951537-98951304) | |
| 341-574, gnl|loxAfr1|scaffold_21760 (1374-1621) | |
| 341-574, gnl|mm7|chr5 (136816787-136817033) | |
| 341-574, gnl|Mm7|chr5 (136817028-136816795) | |
| 341-574, gnl|monDom2|scaffold_17 (3768485-3768720) | |
| 341-574, gnl|oryCun1|scaffold_142799 (13188-12943) | |
| 341-574, gnl|panTro1|chr6 (100735071-100735318) | |
| 341-574, gnl|rheMac2|chr3 (46907741-46907986) | |
| 341-574, gnl|rn3|chr12 (9125838-9126084) | |
| 341-574, gnl|tetNig1|chr9 (5138081-5138325) | |
| 341-574, gnl|xenTro1|scaffold_73 (1863778-1864010) | |
| 728-1266, gnl|bosTau2|chr25 (33002689-33003238) | |
| 728-1266, gnl|Hg17|chr7 (99000507-98999950) | |
| 728-1266, gnl|Mm7|chr5 (136812371-136811866) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sin (2.09937) | |
| lun (1.05342) | |
| duo (0.691204) | |
| sme (0.610874) | |
| jej (0.494609) | |
| pan (0.471921) | |
| ill (0.351185) | |
| col (0.195008) | |
| tbr (0.154178) | |
| cli (0.152812) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (2.09937) | |
| lun (1.05342) | |
| duo (0.691204) | |
| sme (0.610874) | |
| jej (0.494609) | |
| pan (0.471921) | |
| ill (0.351185) | |
| col (0.195008) | |
| tbr (0.154178) | |
| cli (0.152812) |