Non-Coding RNA Search

Ss1.1-rplun0133_b23.5

Sequence:


               
               CTTAGTGCAGATATTACCAGCATGCCAGGCACCTGACGTTAAGCAGAGCTTTTCCAGATA
AATTCCACATGGAACCCACATCACCACCAACGACGGAAGGGTTTAAATACCCCAGGCCTT
CCTCAGTGCCACCTTCCCCTTCAGGGTCTCAGGTCTCCAGTCCTCAGAGCAGTGACGCGG
AGGATGAGAATGAAGACGAGAGATACGATGAGGAAGAGGAGGCCGAAAGGGATCGGTTAA
ATATCAAGTCACCCTTTTCTCTGGGCCGTGTTCCTCGGGGGAAGAAGAAACTGCATGGAG
AATACAAGAACTGAATTCCACCCTTGTCGAACGGGCTAGCTTAGTGAGAACAGAGTAAGA
ATGATTATTTAAGGAAGTGAGAAGGCGACACGTTTCATTCTATTCTTCTCAGTATTACAA
CAGGATTTAGTCTCTGCCTAAAAAGTGGAGGAGATGAAGTGAATGGCAGTTTTGCCATTT
ATGATAAAATCCACGTTGTTTCCCCCAACTCCTGTTTCCCCAGGAAACTGAGGCACAAAG
AAGAGTGTTAACTAAAGGAGGAAGACTGGAAGTATTTTTAAAAGGGTTATTTTAAGCCAG
AGGAATTTTCAGTTCCTAATGTTTATTTTTTAATTATCATCACCATAATCCTTTGATTAA
AGTTTATGTAGCTTCTAGCCCTGCTGCCTATACAAGTCAGCCATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGTGCAGATATTACCAGCATGCCAGGCACCTGACGTTAAGCAGAGCTTTTCCAGATA
AATTCCACATGGAACCCACATCACCACCAACGACGGAAGGGTTTAAATACCCCAGGCCTT
CCTCAGTGCCACCTTCCCCTTCAGGGTCTCAGGTCTCCAGTCCTCAGAGCAGTGACGCGG
AGGATGAGAATGAAGACGAGAGATACGATGAGGAAGAGGAGGCCGAAAGGGATCGGTTAA
ATATCAAGTCACCCTTTTCTCTGGGCCGTGTTCCTCGGGGGAAGAAGAAACTGCATGGAG
AATACAAGAACTGAATTCCACCCTTGTCGAACGGGCTAGCTTAGTGAGAACAGAGTAAGA
ATGATTATTTAAGGAAGTGAGAAGGCGACACGTTTCATTCTATTCTTCTCAGTATTACAA
CAGGATTTAGTCTCTGCCTAAAAAGTGGAGGAGATGAAGTGAATGGCAGTTTTGCCATTT
ATGATAAAATCCACGTTGTTTCCCCCAACTCCTGTTTCCCCAGGAAACTGAGGCACAAAG
AAGAGTGTTAACTAAAGGAGGAAGACTGGAAGTATTTTTAAAAGGGTTATTTTAAGCCAG
AGGAATTTTCAGTTCCTAATGTTTATTTTTTAATTATCATCACCATAATCCTTTGATTAA
AGTTTATGTAGCTTCTAGCCCTGCTGCCTATACAAGTCAGCCATTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-248, + strand, RNAz p=0.947897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-248, + strand, RNAz p=0.947897

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021957, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               92-704, gnl|bosTau2|chr5 (57251046-57250437)
               

               
               92-704, gnl|Hg17|chr12 (21581377-21580772)
               

               
               92-704, gnl|Mm7|chr6 (142511325-142510636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-704, gnl|bosTau2|chr5 (57251046-57250437)
               

               
               92-704, gnl|Hg17|chr12 (21581377-21580772)
               

               
               92-704, gnl|Mm7|chr6 (142511325-142510636)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.451467)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)

	92-704, gnl\|bosTau2\|chr5 (57251046-57250437)
	92-704, gnl\|Hg17\|chr12 (21581377-21580772)
	92-704, gnl\|Mm7\|chr6 (142511325-142510636)