Non-Coding RNA Search

Ss1.1-rplun0138_m11.5

Sequence:


               
               TCCTGAACAATCTGGTATTGCGAATTCTGAAGAAATGCTACGGAGAAGGATTTAAGTTGG
TGGAGATTCCTATCATCAAGGAAATTTCTCTTGAAGGGCCACATGACAGTGACAACTGTG
AGGCATGTCTGCAGGGCTTTTGCATCCAGAGTGGGTTAGGTCTGGCCACGCAGGCACCAA
TGTCCCCATCACTTCCTACAATAAGCTCACCCCCCGTTGAGATAGCAATCCAAATGCCTT
CTCCCACAAGGAGTAGCACCACAGAGGATGCAGTGAAGAAAAAGAAGGTAATACCCAGAC
CCTGGTTTCCTGAAGCTACACAAGCTGAGAGCCTCCCCACTTCCTGGAGCCCAAGAGCAG
ACACCAACTCCCAGGAATCAGAGAGCAGACATCAGCTCCCAGAGCCCAAGAGCAGATACC
AACTCCTCCCAGAGCCAGAGAGTAGACATCAGCTCCCAGAACCTGAGAGCAAAGACCAAC
TCCCAGAGCCCAAGAAGAAAGACCAACTCCCAGAGCCCGAGAGCAAAGACCAAATCCCAG
AGCCCAAGAACAGACACCAGCTCTCAGAGGTGGAGAGCGAATACCTACCTCCAAGTGGAG
AGAAGAGTGCAAGACTCCCTCTCCAGGGAGGTTTACTATTCCCACACAGCTCAAACTTTC
AGGAGCAGGAATTTAGGCTGTTGCTGTTGTCTCATCCTAATAATCATCGTCATTGTAATT
GTTATAAAAATCACTATCTGAGCCTCAAAGGCATGATGCTGAGTTTAAAAACTCGGACAC
ACAGTCTAATCCCACTGATGTGAAATATTCAGAATACATAAATCCAGAGACAGGAAGTGT
CTGTCATTTCCCCCCAATCATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAACAATCTGGTATTGCGAATTCTGAAGAAATGCTACGGAGAAGGATTTAAGTTGG
TGGAGATTCCTATCATCAAGGAAATTTCTCTTGAAGGGCCACATGACAGTGACAACTGTG
AGGCATGTCTGCAGGGCTTTTGCATCCAGAGTGGGTTAGGTCTGGCCACGCAGGCACCAA
TGTCCCCATCACTTCCTACAATAAGCTCACCCCCCGTTGAGATAGCAATCCAAATGCCTT
CTCCCACAAGGAGTAGCACCACAGAGGATGCAGTGAAGAAAAAGAAGGTAATACCCAGAC
CCTGGTTTCCTGAAGCTACACAAGCTGAGAGCCTCCCCACTTCCTGGAGCCCAAGAGCAG
ACACCAACTCCCAGGAATCAGAGAGCAGACATCAGCTCCCAGAGCCCAAGAGCAGATACC
AACTCCTCCCAGAGCCAGAGAGTAGACATCAGCTCCCAGAACCTGAGAGCAAAGACCAAC
TCCCAGAGCCCAAGAAGAAAGACCAACTCCCAGAGCCCGAGAGCAAAGACCAAATCCCAG
AGCCCAAGAACAGACACCAGCTCTCAGAGGTGGAGAGCGAATACCTACCTCCAAGTGGAG
AGAAGAGTGCAAGACTCCCTCTCCAGGGAGGTTTACTATTCCCACACAGCTCAAACTTTC
AGGAGCAGGAATTTAGGCTGTTGCTGTTGTCTCATCCTAATAATCATCGTCATTGTAATT
GTTATAAAAATCACTATCTGAGCCTCAAAGGCATGATGCTGAGTTTAAAAACTCGGACAC
ACAGTCTAATCCCACTGATGTGAAATATTCAGAATACATAAATCCAGAGACAGGAAGTGT
CTGTCATTTCCCCCCAATCATGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|41688299|dbj|BAD08652.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41688299|dbj|BAD08652.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               574-692, + strand, RNAz p=0.696111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-692, + strand, RNAz p=0.696111

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-390, gnl|bosTau2|chr22 (42679977-42680365)
               


               
               574-838, gnl|bosTau2|chr22 (42680330-42680620)
               

               
               574-838, gnl|Hg17|chr3 (46517226-46517495)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-390, gnl|bosTau2|chr22 (42679977-42680365)
               


               
               574-838, gnl|bosTau2|chr22 (42680330-42680620)
               

               
               574-838, gnl|Hg17|chr3 (46517226-46517495)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.300978)
               

               
               cli (0.152812)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               cli (0.152812)

	1-390, gnl\|bosTau2\|chr22 (42679977-42680365)

	574-838, gnl\|bosTau2\|chr22 (42680330-42680620)
	574-838, gnl\|Hg17\|chr3 (46517226-46517495)