Non-Coding RNA Search

Ss1.1-rplun0139_f23.5

Sequence:


               
               AGGAATGGCTTTATGATTCATTAAGAACGGCGTTCACACATCCTCACACCAGTATCTTCC
ACTGTTCTTGTGTAGTCATCCTAAGAGTAGGGTTATGCGATTTATGCGGGAGTGTTATCG
GCGCTTTCAAATGCTTTTTTTTTTTTTCTATTTCTAGGAATTCAAATAAGTGCAAATACT
TAGCAACTTAGATGGTAAAAAATAGAGGAAATGCGTACACTTCATGTAGGTCTCATGCAG
TTGCGTTTTGCTTCTTTATAAGCTGTCATCAGGGATGGCTGTTTAGCCCACCAGGCAAGA
GAGCAAGAGTGATGGATGTTTAAAGAGGCAGGTTGCTCCAAGGTGTTTCATAACTTTGAA
ATTGAGAATTGATTTGATAGCCTGTTTAAAAAAAACCACACACACCTCGCCTGTTACCTA
AAAAGTCGGAGGAAGCACATACAGTTATGCCTTTCAAAGATAAAAATAGTTTCTCAAAGT
CTGAGGCTCTCTGAAAACCAGCTTCTCAAAAATGCCATTTTTTGGTGAAAATTTAAACAG
GCAGATTGGCTTATTTTTCACGCCTGCTTTTGAAAAAAAGTCTTGGTAGTGTGTCCCCAT
TCCACTAGATGGCAGTGTTGCTCAGTGTCAAAGGCGTTTTTTTTTTTTTCTTCCCCCTAA
AAGGAATCGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATGGCTTTATGATTCATTAAGAACGGCGTTCACACATCCTCACACCAGTATCTTCC
ACTGTTCTTGTGTAGTCATCCTAAGAGTAGGGTTATGCGATTTATGCGGGAGTGTTATCG
GCGCTTTCAAATGCTTTTTTTTTTTTTCTATTTCTAGGAATTCAAATAAGTGCAAATACT
TAGCAACTTAGATGGTAAAAAATAGAGGAAATGCGTACACTTCATGTAGGTCTCATGCAG
TTGCGTTTTGCTTCTTTATAAGCTGTCATCAGGGATGGCTGTTTAGCCCACCAGGCAAGA
GAGCAAGAGTGATGGATGTTTAAAGAGGCAGGTTGCTCCAAGGTGTTTCATAACTTTGAA
ATTGAGAATTGATTTGATAGCCTGTTTAAAAAAAACCACACACACCTCGCCTGTTACCTA
AAAAGTCGGAGGAAGCACATACAGTTATGCCTTTCAAAGATAAAAATAGTTTCTCAAAGT
CTGAGGCTCTCTGAAAACCAGCTTCTCAAAAATGCCATTTTTTGGTGAAAATTTAAACAG
GCAGATTGGCTTATTTTTCACGCCTGCTTTTGAAAAAAAGTCTTGGTAGTGTGTCCCCAT
TCCACTAGATGGCAGTGTTGCTCAGTGTCAAAGGCGTTTTTTTTTTTTTCTTCCCCCTAA
AAGGAATCGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-502, + strand, RNAz p=0.738855

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-502, + strand, RNAz p=0.738855

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC000195, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC000195, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-671, gnl|bosTau2|chr25 (18581821-18581170)
               

               
               3-671, gnl|canFam2|chr6 (26210531-26209497)
               

               
               3-671, gnl|dasNov1|scaffold_33259 (2297-3318)
               

               
               3-671, gnl|echTel1|scaffold_310134 (5794-4765)
               

               
               3-671, gnl|hg17|chr16 (21575269-21576288)
               

               
               3-671, gnl|Hg17|chr16 (21575604-21576250)
               

               
               3-671, gnl|loxAfr1|scaffold_48237 (3311-2288)
               

               
               3-671, gnl|mm7|chr7 (116999512-117000358)
               

               
               3-671, gnl|Mm7|chr7 (116999757-117000319)
               

               
               3-671, gnl|monDom2|scaffold_19 (42948681-42949731)
               

               
               3-671, gnl|oryCun1|scaffold_187088 (14032-15029)
               

               
               3-671, gnl|panTro1|chr18 (22133869-22134892)
               

               
               3-671, gnl|rheMac2|chr20 (20924795-20925804)
               

               
               3-671, gnl|rn3|chr1 (180064776-180065561)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-671, gnl|bosTau2|chr25 (18581821-18581170)
               

               
               3-671, gnl|canFam2|chr6 (26210531-26209497)
               

               
               3-671, gnl|dasNov1|scaffold_33259 (2297-3318)
               

               
               3-671, gnl|echTel1|scaffold_310134 (5794-4765)
               

               
               3-671, gnl|hg17|chr16 (21575269-21576288)
               

               
               3-671, gnl|Hg17|chr16 (21575604-21576250)
               

               
               3-671, gnl|loxAfr1|scaffold_48237 (3311-2288)
               

               
               3-671, gnl|mm7|chr7 (116999512-117000358)
               

               
               3-671, gnl|Mm7|chr7 (116999757-117000319)
               

               
               3-671, gnl|monDom2|scaffold_19 (42948681-42949731)
               

               
               3-671, gnl|oryCun1|scaffold_187088 (14032-15029)
               

               
               3-671, gnl|panTro1|chr18 (22133869-22134892)
               

               
               3-671, gnl|rheMac2|chr20 (20924795-20925804)
               

               
               3-671, gnl|rn3|chr1 (180064776-180065561)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               lun (0.150489)

	3-671, gnl\|bosTau2\|chr25 (18581821-18581170)
	3-671, gnl\|canFam2\|chr6 (26210531-26209497)
	3-671, gnl\|dasNov1\|scaffold_33259 (2297-3318)
	3-671, gnl\|echTel1\|scaffold_310134 (5794-4765)
	3-671, gnl\|hg17\|chr16 (21575269-21576288)
	3-671, gnl\|Hg17\|chr16 (21575604-21576250)
	3-671, gnl\|loxAfr1\|scaffold_48237 (3311-2288)
	3-671, gnl\|mm7\|chr7 (116999512-117000358)
	3-671, gnl\|Mm7\|chr7 (116999757-117000319)
	3-671, gnl\|monDom2\|scaffold_19 (42948681-42949731)
	3-671, gnl\|oryCun1\|scaffold_187088 (14032-15029)
	3-671, gnl\|panTro1\|chr18 (22133869-22134892)
	3-671, gnl\|rheMac2\|chr20 (20924795-20925804)
	3-671, gnl\|rn3\|chr1 (180064776-180065561)