Non-Coding RNA Search

Ss1.1-rplun0140_g14.5

Sequence:


               
               TGGAGGTGGAGATCCCCAAACTCCTTGAAATTGTATGCAGAAATTAGGGGGAATGTGCAT
TTTAGAGAATGAGAAGCCATCGCCAGCAAGTTTTCATTGGGGGCTGTGACCCAGAAGAAT
TAAGAACCACATTTCCTTTGTCACAAGGAGGAAACTGAGGCCAGATGTCATTTGGGACCC
TTCACAACCAATTCGAAGCCCCTGTTTGAATCCCTGAGATATGTGAGCTGTTCTGTGCAT
AGTGGATATTCGTGGTAACAACACTCCACTTCTTGGCTTCTATTTTGAGTTCTTTCACCA
TGGGTTGCCTAAAGGGTGACTGATGCTTAAAGGTACAGTGGCACCCAGCATAAAGCAGCT
AAAACTGGGCATGGATATGTTCTCTAGTATCAAGAAGCTTATTTAATCTTTGGCCCAACA
ACTTTTTTTTTTTCTGGTGCCTGACTACCTTTCTGACTCTTCATTGACCATTTTCTATGA
CCATGGTTGCCATCCGTTACTTTCCCCTATTTTATATTCCTAGTCTGTGTGGTTGGTAGT
GAGCAGGCTTATTTTTAAATGGTGCTGCCAAGTCCAACTAATTAATGGTGCAGGTGGATT
TTTAGCAAGCTGGCTCACTAGAACAGACTGAACCAGGCATGGAATTCTTGAAAATGTTTG
GGGGGTTGAGTCTTTATTAATTGAAGGTTAACGTTTTCTGAGAAGTTTTGTTAGAATTTT
CTGCTGAACCTCAAAATCAGATTGAAAGTGTTTCAACCTTAAATTTTTTCTGGTCTGCTT
TGTATTCTATTTGCTTGCAAGTGTGTTACTAAGATGGCCAAAATGCCAGTTTTTGCTTCT
TTGTTAATTGTCAGCTGCTTTTATCAAATATCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGTGGAGATCCCCAAACTCCTTGAAATTGTATGCAGAAATTAGGGGGAATGTGCAT
TTTAGAGAATGAGAAGCCATCGCCAGCAAGTTTTCATTGGGGGCTGTGACCCAGAAGAAT
TAAGAACCACATTTCCTTTGTCACAAGGAGGAAACTGAGGCCAGATGTCATTTGGGACCC
TTCACAACCAATTCGAAGCCCCTGTTTGAATCCCTGAGATATGTGAGCTGTTCTGTGCAT
AGTGGATATTCGTGGTAACAACACTCCACTTCTTGGCTTCTATTTTGAGTTCTTTCACCA
TGGGTTGCCTAAAGGGTGACTGATGCTTAAAGGTACAGTGGCACCCAGCATAAAGCAGCT
AAAACTGGGCATGGATATGTTCTCTAGTATCAAGAAGCTTATTTAATCTTTGGCCCAACA
ACTTTTTTTTTTTCTGGTGCCTGACTACCTTTCTGACTCTTCATTGACCATTTTCTATGA
CCATGGTTGCCATCCGTTACTTTCCCCTATTTTATATTCCTAGTCTGTGTGGTTGGTAGT
GAGCAGGCTTATTTTTAAATGGTGCTGCCAAGTCCAACTAATTAATGGTGCAGGTGGATT
TTTAGCAAGCTGGCTCACTAGAACAGACTGAACCAGGCATGGAATTCTTGAAAATGTTTG
GGGGGTTGAGTCTTTATTAATTGAAGGTTAACGTTTTCTGAGAAGTTTTGTTAGAATTTT
CTGCTGAACCTCAAAATCAGATTGAAAGTGTTTCAACCTTAAATTTTTTCTGGTCTGCTT
TGTATTCTATTTGCTTGCAAGTGTGTTACTAAGATGGCCAAAATGCCAGTTTTTGCTTCT
TTGTTAATTGTCAGCTGCTTTTATCAAATATCAGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               94-210, + strand, RNAz p=0.851306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-210, + strand, RNAz p=0.851306

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr17 (43059707-43060578)
               

               
               1-876, gnl|Hg17|chr22 (29690661-29691584)
               

               
               1-876, gnl|Mm7|chr11 (3600208-3599289)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr17 (43059707-43060578)
               

               
               1-876, gnl|Hg17|chr22 (29690661-29691584)
               

               
               1-876, gnl|Mm7|chr11 (3600208-3599289)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               lun (0.150489)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               eje (0.0988338)

	1-876, gnl\|bosTau2\|chr17 (43059707-43060578)
	1-876, gnl\|Hg17\|chr22 (29690661-29691584)
	1-876, gnl\|Mm7\|chr11 (3600208-3599289)