Non-Coding RNA Search

Ss1.1-rpro18_o5.5

Sequence:


               
               GGCTGCGCGCTCTCTCTGCTCCGTCCACCGCTTTGGATCCGCTTCCATCTCTTTTACCGT
AAGGTCGTTCGTCAGACCCCAGCAGCCAAAATGGTGAAGCAGATTGAGAGCAAGTACGCT
TTTCAGGAAGCCTTGAACAGTGCAGGAGAGAAACTCGTAGTGGTCGATTTCTCAGCCACG
TGGTGTGGGCCTTGCAAAATGATCAAGCCTTTCTTCCATTCTCTCTCTGAAAAGTATTCC
AATGTCGTGTTCCTTGAAGTAGATGTGGATGACTGTCAGGATGTTGCTTCAGAGTGTGAA
GTCAAATGCATGCCAACCTTCCAGTTTTTTAAAAAGGGACAGAAGGTGGGTGAATTTTCT
GGAGCTAACAAGGAAAAACTTGAAGCCACCATTAATGAATTAATCTAATCATGTTTTCTG
AAGACATGACCAGCCATTGGCTGTTTAAAACTTGTAATTTTTTATTTACAAAAAGGAAAG
ATCAAGTATGAAGACTATATACCCAATCACCATCTGATAAGTGATAATAAAATAGTAACT
CTACCCTTTTTAAAACCTCCTGGTATCTTTGAATAGTTTTAAATAAATGAAAACTGATCA
TTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCGCGCTCTCTCTGCTCCGTCCACCGCTTTGGATCCGCTTCCATCTCTTTTACCGT
AAGGTCGTTCGTCAGACCCCAGCAGCCAAAATGGTGAAGCAGATTGAGAGCAAGTACGCT
TTTCAGGAAGCCTTGAACAGTGCAGGAGAGAAACTCGTAGTGGTCGATTTCTCAGCCACG
TGGTGTGGGCCTTGCAAAATGATCAAGCCTTTCTTCCATTCTCTCTCTGAAAAGTATTCC
AATGTCGTGTTCCTTGAAGTAGATGTGGATGACTGTCAGGATGTTGCTTCAGAGTGTGAA
GTCAAATGCATGCCAACCTTCCAGTTTTTTAAAAAGGGACAGAAGGTGGGTGAATTTTCT
GGAGCTAACAAGGAAAAACTTGAAGCCACCATTAATGAATTAATCTAATCATGTTTTCTG
AAGACATGACCAGCCATTGGCTGTTTAAAACTTGTAATTTTTTATTTACAAAAAGGAAAG
ATCAAGTATGAAGACTATATACCCAATCACCATCTGATAAGTGATAATAAAATAGTAACT
CTACCCTTTTTAAAACCTCCTGGTATCTTTGAATAGTTTTAAATAAATGAAAACTGATCA
TTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47523692|ref|NP_999478.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523692|ref|NP_999478.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               87-568, gnl|bosTau2|chr24 (30188074-30187594)
               

               
               87-568, gnl|Hg17|chr18 (9877817-9878310)
               

               
               87-568, gnl|Mm7|chr17 (63855386-63854911)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-568, gnl|bosTau2|chr24 (30188074-30187594)
               

               
               87-568, gnl|Hg17|chr18 (9877817-9878310)
               

               
               87-568, gnl|Mm7|chr17 (63855386-63854911)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               ova (3.74483)
               

               
               sin (3.324)
               

               
               rec (2.76912)
               

               
               gul (2.48624)
               

               
               sto (2.15789)
               

               
               cbe (2.15311)
               

               
               csk (2.11119)
               

               
               amn (2.08855)
               

               
               cmu (2.05033)
               

               
               lyg (1.99654)
               

               
               mga (1.92246)
               

               
               mgp (1.84544)
               

               
               spc (1.81385)
               

               
               sug (1.78208)
               

               
               bla (1.74086)
               

               
               ski (1.61409)
               

               
               nco (1.4556)
               

               
               thg (1.3947)
               

               
               aor (1.36692)
               

               
               ill (1.22915)
               

               
               sme (1.22175)
               

               
               fce (1.08637)
               

               
               pgl (0.947867)
               

               
               fco (0.943248)
               

               
               isp (0.902256)
               

               
               duo (0.864006)
               

               
               eye (0.852515)
               

               
               nje (0.8296)
               

               
               jej (0.791374)
               

               
               nlu (0.766724)
               

               
               fat (0.737137)
               

               
               kid (0.648677)
               

               
               fcc (0.593354)
               

               
               cte (0.58548)
               

               
               col (0.585023)
               

               
               jca (0.569801)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               nca (0.547495)
               

               
               ssp (0.542079)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               tra (0.492368)
               

               
               eep (0.490256)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               ret (0.257467)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (3.74483)
               

               
               sin (3.324)
               

               
               rec (2.76912)
               

               
               gul (2.48624)
               

               
               sto (2.15789)
               

               
               cbe (2.15311)
               

               
               csk (2.11119)
               

               
               amn (2.08855)
               

               
               cmu (2.05033)
               

               
               lyg (1.99654)
               

               
               mga (1.92246)
               

               
               mgp (1.84544)
               

               
               spc (1.81385)
               

               
               sug (1.78208)
               

               
               bla (1.74086)
               

               
               ski (1.61409)
               

               
               nco (1.4556)
               

               
               thg (1.3947)
               

               
               aor (1.36692)
               

               
               ill (1.22915)
               

               
               sme (1.22175)
               

               
               fce (1.08637)
               

               
               pgl (0.947867)
               

               
               fco (0.943248)
               

               
               isp (0.902256)
               

               
               duo (0.864006)
               

               
               eye (0.852515)
               

               
               nje (0.8296)
               

               
               jej (0.791374)
               

               
               nlu (0.766724)
               

               
               fat (0.737137)
               

               
               kid (0.648677)
               

               
               fcc (0.593354)
               

               
               cte (0.58548)
               

               
               col (0.585023)
               

               
               jca (0.569801)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               nca (0.547495)
               

               
               ssp (0.542079)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               tra (0.492368)
               

               
               eep (0.490256)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               ret (0.257467)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	87-568, gnl\|bosTau2\|chr24 (30188074-30187594)
	87-568, gnl\|Hg17\|chr18 (9877817-9878310)
	87-568, gnl\|Mm7\|chr17 (63855386-63854911)

	ova (3.74483)
	sin (3.324)
	rec (2.76912)
	gul (2.48624)
	sto (2.15789)
	cbe (2.15311)
	csk (2.11119)
	amn (2.08855)
	cmu (2.05033)
	lyg (1.99654)
	mga (1.92246)
	mgp (1.84544)
	spc (1.81385)
	sug (1.78208)
	bla (1.74086)
	ski (1.61409)
	nco (1.4556)
	thg (1.3947)
	aor (1.36692)
	ill (1.22915)
	sme (1.22175)
	fce (1.08637)
	pgl (0.947867)
	fco (0.943248)
	isp (0.902256)
	duo (0.864006)
	eye (0.852515)
	nje (0.8296)
	jej (0.791374)
	nlu (0.766724)
	fat (0.737137)
	kid (0.648677)
	fcc (0.593354)
	cte (0.58548)
	col (0.585023)
	jca (0.569801)
	nep (0.551775)
	sag (0.548145)
	nca (0.547495)
	ssp (0.542079)
	nmm (0.531209)
	fty (0.527519)
	ton (0.526501)
	pro (0.512033)
	cki (0.495704)
	tra (0.492368)
	eep (0.490256)
	tes (0.415628)
	ste (0.405625)
	mgm (0.360685)
	med (0.348756)
	cut (0.339847)
	vin (0.332557)
	eli (0.303628)
	lun (0.300978)
	bfe (0.299715)
	nbm (0.297974)
	lin (0.291206)
	cst (0.280073)
	pla (0.267344)
	cov (0.264306)
	ret (0.257467)
	ebs (0.236602)
	pan (0.23596)
	mas (0.210305)
	hea (0.204499)
	eje (0.197668)
	fbs (0.175346)
	csp (0.161186)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)