Non-Coding RNA Search

Ss1.1-rpro19_a7.5

Sequence:


               
               TCAAAGATATTTCCACCAATAAGAGGATTTTTTTAAATTGCAGAATTGATAGTAGTCTCA
AACCTGTCTTAAAGCTAGCATACTTCTGTTATATCACTAAAAATATTTCTGCTAATATTT
CTAAAACAGTATAGTTTTACAGCCAGTTCCCCTTCCAGTTCTAAAATTCCGCTTGAAAGT
ATTGAACACACTTCCCATCACTTATGCTTCAAGTTTGTTTGTTGAAGAATAGAGACTAGA
TCTTAGAATTGTATATAAAATGACATATTACCCATTCAGGAAAAATATTTAAGTATTGCT
TTTTTGCTGCTGTATTCTGCATCGAGCCTGGTTTTGCCATCCCCCCATGATTATACATGA
CTATGTCTATTGCTTTCAGCATAAGTGAAGATTTAGTTGTAATATTCCAGCTGTGAAAAA
GTTGCCTTGTGTTTAAAAGGGTTTCATGAATGGAAACCTCAGTAAAACTCAGCTCGTTAG
TGACAGACTTGCTTTGCTCACATCCTCCACCAACTCCTCCGCCCTCACATCCCACTGCCT
ACCACCCCCATACGGGTGCTTGTTCTTTAGCGAAGAGAATCTCAAAAAGGAAAAAAAAAA
AAAAAGAATTGCTGTCTTTAATATATCTCGTAATTGTTACACTAAGTAGAGCTTTTATTT
CCCTCTGTAGCCTTTTAGAAAAAAAACAGCCTACCTTGGATTTGTAAAACAAGCTGCAAC
TTTCTGATGTCTGTGTGCTCATATGTCTTATAGATATGGCTGGTGTCCCTTGTGTGTGTA
AGTGAAATATGAAGCATGCTCATTCCCTCGCTCTCTTTGAAGTAAAAGGGAAAGGATCGC
AGTGCGGCTGGCTCGTGATTGTAGATGGAAGGGTCTGTCAGCACACACGGAAAGCCCCCA
TTTTCACAGATTTATAACTTTAATAATCCAGATGCGATCATTGCAAGTATTTAATATGCA
ATAGGTAGCACCTTAACTAATTAATCTGCATAGGAAGGGTTTTCTGATGTATTTAGTAAG
ACGTGTGGAAGCTCTTCAAGCATTAAACTAGAGTTGACATTTTATTTCGTTTATTTTCTA
TGTCAAAAAATCCATTCTTACAGTGGAGTCGAAATCTGTAACAAATGATACGTTGGGCCT
ATCAATCTTCGATCTTCCAGGTGGTTTGTATTTTGAGGTACAGAAAAAATGCTGCAGATC
TAGAACTGTATATATGTAGCAGGTATTTGAAAGACACAAGCATTATTTATAACTGAAGAG
TATTACACTTGTTAAGTAAAATGCTCCAGTGACTTGTATATGTTTTTGCAGGTACGAACT
CAAAAGTATGTAAGCATTACATGATGTGACAATTGTATAATTTATGTAATCTGATGCATG
AATCAGAATTTTTATATGATATATTGATTATTGGTTATTATAGTTGATTAAAGTGTTTAA
AGCTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAGATATTTCCACCAATAAGAGGATTTTTTTAAATTGCAGAATTGATAGTAGTCTCA
AACCTGTCTTAAAGCTAGCATACTTCTGTTATATCACTAAAAATATTTCTGCTAATATTT
CTAAAACAGTATAGTTTTACAGCCAGTTCCCCTTCCAGTTCTAAAATTCCGCTTGAAAGT
ATTGAACACACTTCCCATCACTTATGCTTCAAGTTTGTTTGTTGAAGAATAGAGACTAGA
TCTTAGAATTGTATATAAAATGACATATTACCCATTCAGGAAAAATATTTAAGTATTGCT
TTTTTGCTGCTGTATTCTGCATCGAGCCTGGTTTTGCCATCCCCCCATGATTATACATGA
CTATGTCTATTGCTTTCAGCATAAGTGAAGATTTAGTTGTAATATTCCAGCTGTGAAAAA
GTTGCCTTGTGTTTAAAAGGGTTTCATGAATGGAAACCTCAGTAAAACTCAGCTCGTTAG
TGACAGACTTGCTTTGCTCACATCCTCCACCAACTCCTCCGCCCTCACATCCCACTGCCT
ACCACCCCCATACGGGTGCTTGTTCTTTAGCGAAGAGAATCTCAAAAAGGAAAAAAAAAA
AAAAAGAATTGCTGTCTTTAATATATCTCGTAATTGTTACACTAAGTAGAGCTTTTATTT
CCCTCTGTAGCCTTTTAGAAAAAAAACAGCCTACCTTGGATTTGTAAAACAAGCTGCAAC
TTTCTGATGTCTGTGTGCTCATATGTCTTATAGATATGGCTGGTGTCCCTTGTGTGTGTA
AGTGAAATATGAAGCATGCTCATTCCCTCGCTCTCTTTGAAGTAAAAGGGAAAGGATCGC
AGTGCGGCTGGCTCGTGATTGTAGATGGAAGGGTCTGTCAGCACACACGGAAAGCCCCCA
TTTTCACAGATTTATAACTTTAATAATCCAGATGCGATCATTGCAAGTATTTAATATGCA
ATAGGTAGCACCTTAACTAATTAATCTGCATAGGAAGGGTTTTCTGATGTATTTAGTAAG
ACGTGTGGAAGCTCTTCAAGCATTAAACTAGAGTTGACATTTTATTTCGTTTATTTTCTA
TGTCAAAAAATCCATTCTTACAGTGGAGTCGAAATCTGTAACAAATGATACGTTGGGCCT
ATCAATCTTCGATCTTCCAGGTGGTTTGTATTTTGAGGTACAGAAAAAATGCTGCAGATC
TAGAACTGTATATATGTAGCAGGTATTTGAAAGACACAAGCATTATTTATAACTGAAGAG
TATTACACTTGTTAAGTAAAATGCTCCAGTGACTTGTATATGTTTTTGCAGGTACGAACT
CAAAAGTATGTAAGCATTACATGATGTGACAATTGTATAATTTATGTAATCTGATGCATG
AATCAGAATTTTTATATGATATATTGATTATTGGTTATTATAGTTGATTAAAGTGTTTAA
AGCTTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-370, gnl|bosTau2|chr26 (26551329-26550955)
               

               
               1-370, gnl|Hg17|chr10 (119755861-119755512)
               

               
               1-370, gnl|Mm7|chr19 (59829322-59828993)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr26 (26551329-26550955)
               

               
               1-370, gnl|Hg17|chr10 (119755861-119755512)
               

               
               1-370, gnl|Mm7|chr19 (59829322-59828993)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               ret (0.7724)
               

               
               tra (0.61546)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               nms (0.427716)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               tra (0.61546)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               nms (0.427716)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-370, gnl\|bosTau2\|chr26 (26551329-26550955)
	1-370, gnl\|Hg17\|chr10 (119755861-119755512)
	1-370, gnl\|Mm7\|chr19 (59829322-59828993)

	ret (0.7724)
	tra (0.61546)
	pro (0.512033)
	cbe (0.478469)
	nms (0.427716)
	sin (0.349895)
	vin (0.332557)
	isp (0.300752)
	lyg (0.266205)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	rec (0.17307)
	fhi (0.169578)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	kid (0.129735)
	bla (0.124347)
	ebs (0.118301)
	cty (0.10408)