Non-Coding RNA Search

Ss1.1-rpro25_i5.5

Sequence:


               
               GACCATGTGCATCAAGGAGAGTCTGCGGCTGCATCCCCCAGTCCCTGGCATCTCCCGTTG
CTGTGCCCAGGATGTTGTGCTCCCAGATGGCCGGGTCATCCCCAAAGGGAACATCTGTGT
CATCAGTATCTTTGGGATTCATCACAACCCATCCGTCTGGCCAGACCCCGAGGTATACAA
TCCCTTCCGCTTTGATCCAGAAAGTCCCCAGAAGAGGTCACCTCTGGCTTTTATTCCCTT
TTCGGCAGGGCCGAGGAACTGCATTGGGCAGACGTTTGCCATGACAGAGATGAAGGTGGT
CCTGGCACTCACACTGCTGCGCTTCCGCGTCCTGCCAGATGAGGAGGAGCCGCGCAGGAA
GCCAGAGATAGTCCTGCGGGCAGAGGGCGGCCTTTGGCTGCGGGTGGAGCCGCTGCGTGG
AGGCCAGCAGTGACCCACCACCTCCTGGCCTGGGGTCCACCCTAACCCTAGACACTTCAC
TTTGTGGAGTCCCAGGAATAAAACTGTGCTGAACCTCAAGAGAGCCAGCAGGGGGCTCTT
GGGTCTCATGAGGATCCAGGGGGGCGGGTGTAGCTGAGAAGGTGGAGGACTGGGATGGAG
GGCAATACTGATATGTGAGCGGGGTCAGGAGGACAGAACTACACTTTAGGGAAGGTGGAG
CAGAGAGCTAGATGCAGAGGACCTGGATCCACCGCTTCTTGCCATTAGACTACCAAAGTT
ACCATCCCTGTCTGCCATTTACTAGCTGTTTTGCTTGGGGAAATTGTTTATCTTTCTAAG
GCTTAGTTCCTTTATTACAGAGTGGTAGCCACCTTCTTGCACTGTTGTTGGGATTGAATA
AGCAAGCCTGTCTCAAACGACTGAGTCAGTATCTGATAAATGTCAGTACTCAATAGGGGT
GAATTTCCTCCCTTCTTTTTTCCCTCACTTTGTCAAATTAAAATGTTTTAAAATCCTCAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCATGTGCATCAAGGAGAGTCTGCGGCTGCATCCCCCAGTCCCTGGCATCTCCCGTTG
CTGTGCCCAGGATGTTGTGCTCCCAGATGGCCGGGTCATCCCCAAAGGGAACATCTGTGT
CATCAGTATCTTTGGGATTCATCACAACCCATCCGTCTGGCCAGACCCCGAGGTATACAA
TCCCTTCCGCTTTGATCCAGAAAGTCCCCAGAAGAGGTCACCTCTGGCTTTTATTCCCTT
TTCGGCAGGGCCGAGGAACTGCATTGGGCAGACGTTTGCCATGACAGAGATGAAGGTGGT
CCTGGCACTCACACTGCTGCGCTTCCGCGTCCTGCCAGATGAGGAGGAGCCGCGCAGGAA
GCCAGAGATAGTCCTGCGGGCAGAGGGCGGCCTTTGGCTGCGGGTGGAGCCGCTGCGTGG
AGGCCAGCAGTGACCCACCACCTCCTGGCCTGGGGTCCACCCTAACCCTAGACACTTCAC
TTTGTGGAGTCCCAGGAATAAAACTGTGCTGAACCTCAAGAGAGCCAGCAGGGGGCTCTT
GGGTCTCATGAGGATCCAGGGGGGCGGGTGTAGCTGAGAAGGTGGAGGACTGGGATGGAG
GGCAATACTGATATGTGAGCGGGGTCAGGAGGACAGAACTACACTTTAGGGAAGGTGGAG
CAGAGAGCTAGATGCAGAGGACCTGGATCCACCGCTTCTTGCCATTAGACTACCAAAGTT
ACCATCCCTGTCTGCCATTTACTAGCTGTTTTGCTTGGGGAAATTGTTTATCTTTCTAAG
GCTTAGTTCCTTTATTACAGAGTGGTAGCCACCTTCTTGCACTGTTGTTGGGATTGAATA
AGCAAGCCTGTCTCAAACGACTGAGTCAGTATCTGATAAATGTCAGTACTCAATAGGGGT
GAATTTCCTCCCTTCTTTTTTCCCTCACTTTGTCAAATTAAAATGTTTTAAAATCCTCAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55648507|ref|XP_512458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55648507|ref|XP_512458.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               413-518, - strand, RNAz p=0.804785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-518, - strand, RNAz p=0.804785

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-108, gnl|bosTau2|chr7 (6712629-6712522)
               

               
               1-108, gnl|Hg17|chr19 (15600139-15600246)
               

               
               1-108, gnl|Mm7|chr17 (30726586-30726693)
               


               
               254-602, gnl|bosTau2|chr7 (6711974-6711610)
               

               
               254-602, gnl|Hg17|chr19 (15601001-15601339)
               


               
               622-952, gnl|bosTau2|chr7 (6692664-6692991)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr7 (6712629-6712522)
               

               
               1-108, gnl|Hg17|chr19 (15600139-15600246)
               

               
               1-108, gnl|Mm7|chr17 (30726586-30726693)
               


               
               254-602, gnl|bosTau2|chr7 (6711974-6711610)
               

               
               254-602, gnl|Hg17|chr19 (15601001-15601339)
               


               
               622-952, gnl|bosTau2|chr7 (6692664-6692991)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pro (1.02407)
               

               
               sag (0.730861)
               

               
               lyg (0.399308)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               sag (0.730861)
               

               
               lyg (0.399308)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

	1-108, gnl\|bosTau2\|chr7 (6712629-6712522)
	1-108, gnl\|Hg17\|chr19 (15600139-15600246)
	1-108, gnl\|Mm7\|chr17 (30726586-30726693)

	254-602, gnl\|bosTau2\|chr7 (6711974-6711610)
	254-602, gnl\|Hg17\|chr19 (15601001-15601339)

	622-952, gnl\|bosTau2\|chr7 (6692664-6692991)

	pro (1.02407)
	sag (0.730861)
	lyg (0.399308)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	cli (0.152812)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	che (0.136314)
	kid (0.129735)
	jej (0.0989218)