Non-Coding RNA Search

Ss1.1-rpro30_f24.5

Sequence:


               
               AATGTGGCCACCCTTCTGTTTTTATCCTGTTATCTCAGGGGACCTGGTAGAGGGGAGACA
TGGGAATGAAAAAAGCCAGTTACTAATGAGGTACCCCAAGGCCTGGAAATCTCTTGATCC
CTCTACTTAATACTGTTCGATGATAAACCTTCCAGTTTCCTCCTATTAAAAAGGTCCAAT
TTACTGTTGGTGGCAAAACTGCCAAAGTCAAGAGAGAGTTGGCTCATTTCTATCATTGGA
GCCCCACATTGAAACACTGTCAGATGCCACGTGCTGCCAACACAGGGAAGCACAGAAGGC
CGGGCAGCCCAAACTGCTTTCTCCTTCTCACATTCTCACACGTCTTCTAAGATAAGCATT
CAGTGCTGGCTCTCTGGTCCGTACCCTTCCTCCCTACCTTCTGCATTGAATCCCTTCAAC
CTCCAAATCTACAAGTATTAAATATTTTACTATGAGGTATATTGTGTTGGAAAAAGAAAA
AAATATGTCTTTGTTTAAAATTATTTGGTTTGGTGACTCTCTCTTGCTTTCCCTCCTGTT
GGAACTGGTCACTCACCCATGTCCAAACTGGTAGAGCAACATTTGAAGAGCTAGTAGATC
TTTATCTGATAGGTGAACTGCACGGTGCCCTGGACCGCTTCACCCAGACAGCCTGGGTTT
TGATCCTGCTTAATAAATTCATTGAGGTTCTCCACGTGCATAACAAACTCTGCTCCAATC
TGTAACACACACGCCTGTGCATTGAAGTTCAGTAAAGTACCCCAACCAAACTTTATTTTT
CTATGTATTTTTTGCAACATGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTGGCCACCCTTCTGTTTTTATCCTGTTATCTCAGGGGACCTGGTAGAGGGGAGACA
TGGGAATGAAAAAAGCCAGTTACTAATGAGGTACCCCAAGGCCTGGAAATCTCTTGATCC
CTCTACTTAATACTGTTCGATGATAAACCTTCCAGTTTCCTCCTATTAAAAAGGTCCAAT
TTACTGTTGGTGGCAAAACTGCCAAAGTCAAGAGAGAGTTGGCTCATTTCTATCATTGGA
GCCCCACATTGAAACACTGTCAGATGCCACGTGCTGCCAACACAGGGAAGCACAGAAGGC
CGGGCAGCCCAAACTGCTTTCTCCTTCTCACATTCTCACACGTCTTCTAAGATAAGCATT
CAGTGCTGGCTCTCTGGTCCGTACCCTTCCTCCCTACCTTCTGCATTGAATCCCTTCAAC
CTCCAAATCTACAAGTATTAAATATTTTACTATGAGGTATATTGTGTTGGAAAAAGAAAA
AAATATGTCTTTGTTTAAAATTATTTGGTTTGGTGACTCTCTCTTGCTTTCCCTCCTGTT
GGAACTGGTCACTCACCCATGTCCAAACTGGTAGAGCAACATTTGAAGAGCTAGTAGATC
TTTATCTGATAGGTGAACTGCACGGTGCCCTGGACCGCTTCACCCAGACAGCCTGGGTTT
TGATCCTGCTTAATAAATTCATTGAGGTTCTCCACGTGCATAACAAACTCTGCTCCAATC
TGTAACACACACGCCTGTGCATTGAAGTTCAGTAAAGTACCCCAACCAAACTTTATTTTT
CTATGTATTTTTTGCAACATGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               116-258, - strand, RNAz p=0.677683
               

               
               288-405, - strand, RNAz p=0.830154

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-258, - strand, RNAz p=0.677683
               

               
               288-405, - strand, RNAz p=0.830154

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               5-799, gnl|bosTau2|chr8 (37248093-37248858)
               

               
               5-799, gnl|canFam2|chr25 (36807082-36806332)
               

               
               5-799, gnl|dasNov1|scaffold_1826 (23045-23818)
               

               
               5-799, gnl|echTel1|scaffold_191835 (1204-433)
               

               
               5-799, gnl|hg17|chr8 (23592163-23592943)
               

               
               5-799, gnl|Hg17|chr8 (23593009-23592196)
               

               
               5-799, gnl|loxAfr1|scaffold_18266 (18686-17942)
               

               
               5-799, gnl|mm7|chr14 (64057197-64056454)
               

               
               5-799, gnl|Mm7|chr14 (64056396-64057163)
               

               
               5-799, gnl|monDom2|scaffold_61 (9514145-9513354)
               

               
               5-799, gnl|panTro1|chr7 (24535829-24536607)
               

               
               5-799, gnl|rheMac2|chr8 (23775553-23776335)
               

               
               5-799, gnl|rn3|chr15 (49763002-49762252)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-799, gnl|bosTau2|chr8 (37248093-37248858)
               

               
               5-799, gnl|canFam2|chr25 (36807082-36806332)
               

               
               5-799, gnl|dasNov1|scaffold_1826 (23045-23818)
               

               
               5-799, gnl|echTel1|scaffold_191835 (1204-433)
               

               
               5-799, gnl|hg17|chr8 (23592163-23592943)
               

               
               5-799, gnl|Hg17|chr8 (23593009-23592196)
               

               
               5-799, gnl|loxAfr1|scaffold_18266 (18686-17942)
               

               
               5-799, gnl|mm7|chr14 (64057197-64056454)
               

               
               5-799, gnl|Mm7|chr14 (64056396-64057163)
               

               
               5-799, gnl|monDom2|scaffold_61 (9514145-9513354)
               

               
               5-799, gnl|panTro1|chr7 (24535829-24536607)
               

               
               5-799, gnl|rheMac2|chr8 (23775553-23776335)
               

               
               5-799, gnl|rn3|chr15 (49763002-49762252)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pro (1.5361)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               pty (0.142714)

	116-258, - strand, RNAz p=0.677683
	288-405, - strand, RNAz p=0.830154

	5-799, gnl\|bosTau2\|chr8 (37248093-37248858)
	5-799, gnl\|canFam2\|chr25 (36807082-36806332)
	5-799, gnl\|dasNov1\|scaffold_1826 (23045-23818)
	5-799, gnl\|echTel1\|scaffold_191835 (1204-433)
	5-799, gnl\|hg17\|chr8 (23592163-23592943)
	5-799, gnl\|Hg17\|chr8 (23593009-23592196)
	5-799, gnl\|loxAfr1\|scaffold_18266 (18686-17942)
	5-799, gnl\|mm7\|chr14 (64057197-64056454)
	5-799, gnl\|Mm7\|chr14 (64056396-64057163)
	5-799, gnl\|monDom2\|scaffold_61 (9514145-9513354)
	5-799, gnl\|panTro1\|chr7 (24535829-24536607)
	5-799, gnl\|rheMac2\|chr8 (23775553-23776335)
	5-799, gnl\|rn3\|chr15 (49763002-49762252)